Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0138
(317 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 28 1.6
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 28 1.6
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr... 27 2.1
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr... 27 2.1
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 27 2.1
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 27 2.1
At3g19380.1 68416.m02458 U-box domain-containing protein contain... 27 3.6
At4g28580.1 68417.m04088 magnesium transporter CorA-like family ... 26 4.8
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a... 26 4.8
At5g48545.1 68418.m06002 histidine triad family protein / HIT fa... 26 6.3
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 26 6.3
At3g52250.1 68416.m05742 myb family transcription factor contain... 26 6.3
At4g22660.1 68417.m03270 F-box family protein contains Pfam PF00... 25 8.3
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 25 8.3
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 25 8.3
At3g21230.1 68416.m02683 4-coumarate--CoA ligase, putative / 4-c... 25 8.3
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 25 8.3
At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein ... 25 8.3
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 2 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 154
P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 2 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 154
P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 352
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 116 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAG 244
S +VVN +H+ H + STV++L +++ W K W G
Sbjct: 210 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQG 248
>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 345
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 116 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAG 244
S +VVN +H+ H + STV++L +++ W K W G
Sbjct: 203 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQG 241
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 2 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 154
P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 2 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 154
P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g19380.1 68416.m02458 U-box domain-containing protein contains
similarity to immediate-early fungal elicitor protein
CMPG1 GI:14582200 [Petroselinum crispum]; contains Pfam
profile PF04564: U-box domain
Length = 421
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 98 RESPPDSKIVVNLTLHLR-HANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLV 271
RE + +VV L L ++ R + ++L L+ +W D N+ ++GCS+ +V
Sbjct: 361 REEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANSDDFGCSSQVV 419
>At4g28580.1 68417.m04088 magnesium transporter CorA-like family
protein (MRS2-6) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 408
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 153 CLKCRVRLTTILESGG-DSRSYVARSESIMRDSDVAFSHSAAL 28
CL R T +E G D + + RS +D AFSHS+ +
Sbjct: 53 CLWTRFDRTGFMEVAGCDKSTIIERSSVSAKDLRTAFSHSSKI 95
>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 906
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 214 DRQTTELERRGMGLQHLAGVLG 279
+R T E + +G+G+ HL VLG
Sbjct: 565 NRNTKEYDSKGLGVIHLCAVLG 586
>At5g48545.1 68418.m06002 histidine triad family protein / HIT
family protein contains Pfam profile PF01230:HIT domain;
contains Prosite motif PS00892: HIT family signature.
Length = 197
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 317 PRLAVPRQASTSVPRTPAKCCSPIPLRSNSVVCRSNS 207
P+L P T P A CS +PL SN++V + S
Sbjct: 89 PKLHYPTLEETP-PSVVAAMCSKVPLISNAIVKATGS 124
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 289 PQAFRGHQPSAAAPFPCVPTQS-FVDPIHLKICQYPHGGLG 170
PQA R H PS+ + + PT + FV P P+G +G
Sbjct: 368 PQAERKHDPSSYS-YGAAPTPAPFVHPTFGGFAAAPYGAMG 407
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 209 NWIDKRLSWNAGEWGCSTWLVSS 277
N D R+S + EW C+TW +S+
Sbjct: 126 NCRDDRVSVSQKEWKCNTWEMSN 148
>At4g22660.1 68417.m03270 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein family,
AtFBX7 (GI:20197899) [Arabidopsis thaliana]
Length = 396
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +2
Query: 152 HANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLV----SSERLWR--PDVVL 307
H + + +TVR + WID++ WG W V + ++LW P+++L
Sbjct: 157 HVKLFKGNNTVRT----PVFWIDEKTKEYIALWGLGYWCVVYAKNGDKLWNQIPEIIL 210
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 46 KRNITVPHDRLAPRNVRSGVSPRLQNRSQPDPAFE 150
+ ++T P D L R + +G + + S P+P E
Sbjct: 660 EESLTEPQDSLDERRIAAGAATTSSSLSSPEPDLE 694
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 245 PLRSNSVVCRSNSFEDLPVSAR 180
PL S++V CRS F+D V+ R
Sbjct: 255 PLNSDAVSCRSLGFDDGAVNTR 276
>At3g21230.1 68416.m02683 4-coumarate--CoA ligase, putative /
4-coumaroyl-CoA synthase, putative (4CL) similar to 4CL2
[gi:12229665] and 4CL1 [gi:12229649] from [Arabidopsis
thaliana], 4CL1 [gi:12229631] from Nicotiana tabacum
Length = 570
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -3
Query: 297 SGLHK---RSEDTSQVLQPHSPAFQLSRLSIQFI 205
+G+H+ R D +L P+SP F LS L++ ++
Sbjct: 88 AGIHRLGIRHGDVVMLLLPNSPEFALSFLAVAYL 121
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 25.4 bits (53), Expect = 8.3
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +1
Query: 43 RKRNITVPHDRLAPRNVRSGVSPRLQNRSQPDPAFETC*HS*VRVHRADTGRSSNELDRQ 222
RKR ++ R R+VR +SPR + P F + S +R HR R ++E RQ
Sbjct: 250 RKRRLSNSRRRSRSRSVRRSLSPRRRRIHSP---FRSRSRSPIRRHR----RPTHEGRRQ 302
Query: 223 TTELERR 243
+ RR
Sbjct: 303 SPAPSRR 309
>At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein
(ZFP6) identical to zinc finger protein, ZFP6
gi|790683|gb|AAA87302; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 197
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 190 YPHGGLGLTNVSMSQMQGQVDYDFGVGGRLPIVR 89
Y HGG GL M M G+V GG LP +R
Sbjct: 139 YFHGGRGLYGGGMESMAGEVKTH---GGSLPEMR 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,386,736
Number of Sequences: 28952
Number of extensions: 148904
Number of successful extensions: 530
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -