Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0137
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    59   2e-10
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   0.80 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    26   1.1  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   1.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   2.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   2.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    24   5.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    24   5.6  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.6  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.6  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    24   5.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    23   7.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    23   7.5  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   7.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    23   9.9  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    23   9.9  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    23   9.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    23   9.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   9.9  

>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 24/62 (38%), Positives = 43/62 (69%)
 Frame = +3

Query: 117 FARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDKPLVQE 296
           F + L+ N+ K R++ +++L+++L     +  +F+  DF ++WKG+FY MWM+DKPL Q+
Sbjct: 7   FIKKLAANDRKTRDKALESLQRFLS----QKKKFERLDFLKLWKGLFYCMWMADKPLYQQ 62

Query: 297 DL 302
            L
Sbjct: 63  KL 64


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 132 SGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDKP 284
           +G+E+KV ++V + +   +  CF + +E +E   T   + I Y+   S  P
Sbjct: 99  TGHESKVSDQVKQVISTPMSTCFEQWFEGEEQSSTGNNQDISYSSVNSLSP 149


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 298 SSCTSGLSDIHIA*NIPFH 242
           SS +SG SD+HIA N  FH
Sbjct: 399 SSASSGGSDVHIAFNYWFH 417


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 248 LPHSREIIFFEFVSPVKTILEPL 180
           +P  R  + F+FVSP+KT+   L
Sbjct: 131 IPDVRSQLGFDFVSPIKTVYNVL 153


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 153  RERVIKTLKKWLQNCFHRGYEFKEDDFTRV 242
            RE  +KT K+ L NC H  +++   ++  V
Sbjct: 1463 RELQLKTAKEILSNCKHLDFDYVNGEWATV 1492


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 105 QEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE 215
           Q + F+ LLS   + VR+ +++ +      CFH  Y+
Sbjct: 43  QTLSFSLLLSNTIHDVRQVILELMLAPPHTCFHLEYK 79


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 96  VVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEF 218
           ++A  +    +++  E  +R+R I+TL + ++N F+R   F
Sbjct: 610 IIAGTVLSTTVVAAAEILLRQRGIRTLPETVRNHFYRSTMF 650


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 294 LVQVAYPTSTSHKIYPSTL 238
           L+ +   +ST HK+YPS L
Sbjct: 188 LISILSSSSTLHKLYPSGL 206


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 287 KWLIRHPHRIK 255
           K L+RHPHR+K
Sbjct: 149 KSLVRHPHRLK 159


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 233 EIIFFEFVSPVKTILEPLFQCFNH 162
           E+IF +FVS  +    P+F  F H
Sbjct: 138 EVIFQDFVSATQYTHFPVFHLFTH 161


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 233 HESVEGYILCDVD 271
           HE VE  ILCD+D
Sbjct: 109 HECVEEAILCDID 121


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 IKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDF 233
           +KF  L S        ++IKTL + L  CFH   +   D++
Sbjct: 53  LKFCVLFSFKTVYSLLKLIKTLIRKLLYCFHYALDLFADEY 93


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 141 ENKVRERVIKTLKKWLQNCFHR-GYEFKEDDFTR 239
           EN+  +  IK  + WLQN  +R   +  + DF R
Sbjct: 296 ENEAHQYEIKGYRLWLQNILNRENCQITKLDFER 329


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 149 FVFVSR*QTRELYLLGNDGNL 87
           ++++S  +T   YL+GN+G+L
Sbjct: 187 YLWISSFRTNVYYLIGNEGDL 207


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 148 LFSFPDNKRANFISWAT 98
           LF  PD   A+ ++WAT
Sbjct: 700 LFMGPDENTADLVNWAT 716


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +3

Query: 150 VRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDKPLVQE 296
           + + +++ L + LQ    + Y   +D+F +V  G F         LV +
Sbjct: 445 IYDELVRILNQLLQRPIFKRYPLLKDEFYKVVIGFFRKCMQPTNTLVMD 493


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 104 PGDKVRAFVIWKRKQSTRTC 163
           PG K  A +IW  K   +TC
Sbjct: 56  PGSKGEANLIWTCKNCRKTC 75


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 122  RELYLLGNDGNLFLF 78
            R++Y+ G DGNL+ F
Sbjct: 2066 RKVYVRGTDGNLYPF 2080


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 256 NIPFHTLVKSSSL 218
           N+PFHT++  SSL
Sbjct: 514 NVPFHTVIFPSSL 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,616
Number of Sequences: 5004
Number of extensions: 19805
Number of successful extensions: 74
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)