Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0137
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 41 2e-04
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 29 0.70
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 2.1
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 27 2.1
10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899 27 2.8
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 27 3.7
03_01_0086 - 699617-699766,699851-699908,699998-700068,700210-70... 27 3.7
04_04_1129 - 31107892-31110246 26 6.5
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 25 8.6
03_02_0469 + 8720119-8720199,8720295-8720372,8720496-8720570,872... 25 8.6
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 102 AQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDK 281
A+ AR L+ RER ++ L D ++WKG+F+ W SDK
Sbjct: 11 AEAAAIARRLASCNGSARERAVRHLLSTFLPA--SAPHLSASDLLKLWKGLFFCFWHSDK 68
Query: 282 PLVQEDL 302
PL Q L
Sbjct: 69 PLYQSSL 75
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 165 IKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSD 278
+K L ++L+NC +FKED+F + FY M D
Sbjct: 564 VKDLLRFLRNCRRHAAQFKEDEFPSI-VDHFYPKLMCD 600
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 198 FHRGYEFKEDDFTRVW 245
F +GYEFK+D+ ++W
Sbjct: 669 FPKGYEFKKDEIVKMW 684
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 75 TKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCF 200
T + +A+V IK L + K V LKKW+ NC+
Sbjct: 42 TLNDMMAIVPLMIKMLGLNLKDNAKGLASVYDPLKKWMDNCY 83
>10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899
Length = 280
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 138 NENKVRERVIKTLKKWLQNCFHRGYEFKEDD 230
NE K R ++++ + +Q CF E +DD
Sbjct: 126 NEKKKRTKMVRYTQDQIQYCFANSVELSDDD 156
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 93 AVVAQEIKFARLLSGNENK-VRERVIKTLKKWLQNCFHRGYEFKEDDFTR-VWKGIFYAM 266
A V Q +F +L + + K + +K +WLQN HRG + + TR V +++
Sbjct: 180 AAVVQTAEFGQLAAESVPKNLHCLTVKLTVEWLQNPKHRGRSEEHRNSTRLVDNNLYHFA 239
Query: 267 WMSDKPL 287
SD L
Sbjct: 240 IFSDNVL 246
>03_01_0086 -
699617-699766,699851-699908,699998-700068,700210-700286,
700384-700466,700545-700604,700848-700983,701056-701126,
701248-701339,701454-701551,701891-702043,702146-702311,
702457-702885,703076-703157,703245-703504
Length = 661
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 207 GYEFKEDDFTRVWKG 251
G+ F EDDF R W+G
Sbjct: 406 GFAFDEDDFCRPWEG 420
>04_04_1129 - 31107892-31110246
Length = 784
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 281 LIRHPHRIKYTLPHSREIIFFEFVSPVKTILEPLFQCF 168
L R+P ++ P R F SP +LEP F CF
Sbjct: 176 LRRYPRPPRHPPPSPRPSTPFSPRSPPMALLEPAFFCF 213
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 174 LKKWLQNC--FHRGYEFKEDDFTRVWKGIFY 260
LK+ C FH+ Y F++D ++W + Y
Sbjct: 424 LKRCFAFCSVFHKDYVFEKDILVQIWMAVGY 454
>03_02_0469 +
8720119-8720199,8720295-8720372,8720496-8720570,
8720666-8720796,8720948-8721002,8721107-8721217,
8721538-8721606,8721687-8721794,8722106-8722174,
8722266-8722320,8722499-8722701
Length = 344
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 216 FKEDDFTRVWKGIFYAMWMSDKPLVQ 293
+KE F WKG+ A+ M P +Q
Sbjct: 182 YKEAGFLGFWKGVVPALIMVSNPAIQ 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,730,891
Number of Sequences: 37544
Number of extensions: 111733
Number of successful extensions: 305
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -