Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0137
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.18 
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        27   3.9  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)                   26   6.7  
SB_42454| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.7  
SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_35021| Best HMM Match : DUF334 (HMM E-Value=1.2)                    25   8.9  
SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                  25   8.9  

>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 87  QVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFH 203
           Q   + + I  A L+S  +N V +  +K+L+KW+  CF+
Sbjct: 316 QTHSLPKSIPSAILISTAQNHVLDSPVKSLRKWVDGCFY 354


>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 141 ENKVRERVIKTLKKWLQNCFHRGYEFKEDD 230
           ENK R + +KT K ++Q C     + KE+D
Sbjct: 193 ENKKRFKQVKTFKDYVQLCLKGATKDKEED 222


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 290 YKWLIRHPHRIKYTLPHS 237
           Y WL   PH   YT PH+
Sbjct: 491 YAWLYTRPHACLYTRPHA 508


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 75  TKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNC 197
           T KEQ   + +EI+ +R L      V++     LKK L NC
Sbjct: 673 TAKEQSIDLRKEIERSRSLKREREDVKQEQDSPLKKRLGNC 713


>SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)
          Length = 306

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -1

Query: 284 WLIRHPHRIKYTLPHSREIIFFEFVSPVKTIL 189
           + + + +  KY  P  +E++FF +++P+K ++
Sbjct: 44  FFVSYGYECKYLTP-MKEVVFFTYLTPMKEVV 74


>SB_42454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 290 YKWLIR-HPHRIKYTLPHSREI 228
           Y W++R  P +  YTLPH R I
Sbjct: 35  YLWIMRITPKKPNYTLPHKRVI 56


>SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 300 GLLVQVAYPTSTSHKIYPSTL 238
           G  V +AY T+  HKIYP  L
Sbjct: 17  GPAVLIAYYTNDLHKIYPDVL 37


>SB_35021| Best HMM Match : DUF334 (HMM E-Value=1.2)
          Length = 371

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 290 YKWLIRHPHRIKYTLPHSREIIFFEFVSPVKTILEPLFQC-FNHTFAYFVFVSR*QTREL 114
           Y + I+ P   +++L    + +   F+  V TI   L +  F     +F  V   +T  L
Sbjct: 289 YSYTIKFPWS-RWSLSGVLDSMRRHFLPFVMTIAHSLTKAMFCEVLFHFTLVPEPRT-SL 346

Query: 113 YLLGNDGNLFLFS 75
           YL+ +D N+ LFS
Sbjct: 347 YLVASDSNISLFS 359


>SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 391

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 290 YKWLIRHPHRIKYTLPHSREIIFFEFVSP 204
           + W  R  H+ KYTLP S + I    V+P
Sbjct: 331 FSWYQRKQHQKKYTLPSSSKRISPADVTP 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,242,427
Number of Sequences: 59808
Number of extensions: 150394
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)