Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0137
         (302 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79775-1|AAC51625.1|  461|Homo sapiens NNP-1/Nop52 protein.            69   4e-12
BC014787-1|AAH14787.2|  466|Homo sapiens RRP1 protein protein.         69   4e-12
BC000380-1|AAH00380.1|  461|Homo sapiens ribosomal RNA processin...    69   4e-12
AP001752-4|BAA95542.1|  461|Homo sapiens NNP-1/Nop52 (NNP-1), no...    69   4e-12
AK223215-1|BAD96935.1|  461|Homo sapiens nucleolar protein NOP52...    69   4e-12
AK223185-1|BAD96905.1|  461|Homo sapiens nucleolar protein NOP52...    69   4e-12
BC028386-1|AAH28386.1|  758|Homo sapiens ribosomal RNA processin...    63   1e-10
BC014005-1|AAH14005.1|  408|Homo sapiens RRP1B protein protein.        63   1e-10
BC050557-1|AAH50557.1| 1208|Homo sapiens timeless homolog (Droso...    27   8.1  

>U79775-1|AAC51625.1|  461|Homo sapiens NNP-1/Nop52 protein.
          Length = 461

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 284
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 285 LVQEDL 302
           L+QE+L
Sbjct: 70  LLQEEL 75


>BC014787-1|AAH14787.2|  466|Homo sapiens RRP1 protein protein.
          Length = 466

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 284
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 15  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 74

Query: 285 LVQEDL 302
           L+QE+L
Sbjct: 75  LLQEEL 80


>BC000380-1|AAH00380.1|  461|Homo sapiens ribosomal RNA processing 1
           homolog (S. cerevisiae) protein.
          Length = 461

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 284
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 285 LVQEDL 302
           L+QE+L
Sbjct: 70  LLQEEL 75


>AP001752-4|BAA95542.1|  461|Homo sapiens NNP-1/Nop52 (NNP-1), novel
           nuclear protein 1 protein.
          Length = 461

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 284
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 285 LVQEDL 302
           L+QE+L
Sbjct: 70  LLQEEL 75


>AK223215-1|BAD96935.1|  461|Homo sapiens nucleolar protein NOP52
           variant protein.
          Length = 461

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 284
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 285 LVQEDL 302
           L+QE+L
Sbjct: 70  LLQEEL 75


>AK223185-1|BAD96905.1|  461|Homo sapiens nucleolar protein NOP52
           variant protein.
          Length = 461

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 284
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 285 LVQEDL 302
           L+QE+L
Sbjct: 70  LLQEEL 75


>BC028386-1|AAH28386.1|  758|Homo sapiens ribosomal RNA processing 1
           homolog B (S. cerevisiae) protein.
          Length = 758

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/71 (36%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = +3

Query: 93  AVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMW 269
           A+   EI+FA+ L+ +E  +R+R +K L++++     R    F +++  ++WKG+FY MW
Sbjct: 4   AMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMW 63

Query: 270 MSDKPLVQEDL 302
           + D+PL+QE+L
Sbjct: 64  VQDEPLLQEEL 74


>BC014005-1|AAH14005.1|  408|Homo sapiens RRP1B protein protein.
          Length = 408

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/71 (36%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = +3

Query: 93  AVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMW 269
           A+   EI+FA+ L+ +E  +R+R +K L++++     R    F +++  ++WKG+FY MW
Sbjct: 4   AMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMW 63

Query: 270 MSDKPLVQEDL 302
           + D+PL+QE+L
Sbjct: 64  VQDEPLLQEEL 74


>BC050557-1|AAH50557.1| 1208|Homo sapiens timeless homolog
            (Drosophila) protein.
          Length = 1208

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 78   KKEQVAVVAQEIKFARLLSGNEN---KVRERVIKTLKKWLQNCFHRGYEFKEDD 230
            ++E+    A++++ + +LS NEN    + +     L  WLQNC  R  + +E+D
Sbjct: 984  EEEEGGSEAEQVQGSLVLS-NENLGQSLHQEGFSILLLWLQNCLIRAADDREED 1036


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,143,698
Number of Sequences: 237096
Number of extensions: 675584
Number of successful extensions: 1378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)