Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0137
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical p... 52 6e-08
AL117200-15|CAB55049.2| 609|Caenorhabditis elegans Hypothetical... 33 0.030
U88173-7|AAK21383.2| 361|Caenorhabditis elegans Hypothetical pr... 27 3.4
U40797-12|AAN84858.1| 230|Caenorhabditis elegans Gex interactin... 26 4.5
U40797-11|AAN84857.1| 313|Caenorhabditis elegans Gex interactin... 26 4.5
U40797-10|AAK95871.1| 617|Caenorhabditis elegans Gex interactin... 26 4.5
AY943817-1|AAY18583.1| 703|Caenorhabditis elegans signal transd... 26 6.0
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 26 6.0
AL132952-23|CAN99759.1| 703|Caenorhabditis elegans Hypothetical... 26 6.0
AL132952-22|CAN86928.1| 567|Caenorhabditis elegans Hypothetical... 26 6.0
AL132952-21|CAB61149.2| 706|Caenorhabditis elegans Hypothetical... 26 6.0
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 26 6.0
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 26 6.0
AC006807-1|AAK84615.1| 130|Caenorhabditis elegans Hypothetical ... 26 6.0
Z82069-1|CAB04902.1| 667|Caenorhabditis elegans Hypothetical pr... 25 7.9
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 25 7.9
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 25 7.9
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 25 7.9
>Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical
protein C47E12.7 protein.
Length = 397
Score = 52.4 bits (120), Expect = 6e-08
Identities = 24/71 (33%), Positives = 43/71 (60%)
Frame = +3
Query: 90 VAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMW 269
V + + E+ FA+ L+ E R+R ++ L W+++ + + F + D R+ KG+ Y MW
Sbjct: 3 VDLASVEVVFAQKLACGEPATRQRALRVLHDWIRDQSAKKH-FDDADLMRLCKGLHYVMW 61
Query: 270 MSDKPLVQEDL 302
M DK ++QE+L
Sbjct: 62 MQDKMILQEEL 72
>AL117200-15|CAB55049.2| 609|Caenorhabditis elegans Hypothetical
protein Y50E8A.6 protein.
Length = 609
Score = 33.5 bits (73), Expect = 0.030
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 150 VRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGI 254
V E+ I+ + K + F + YE K +D T +W GI
Sbjct: 355 VTEKEIQYILKEMNRAFEKEYEIKREDVTSIWSGI 389
>U88173-7|AAK21383.2| 361|Caenorhabditis elegans Hypothetical
protein F46F11.6 protein.
Length = 361
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -2
Query: 190 WSHFFSVLITRSRTLFSFPDNKRANFISWATTATCSFL 77
W H + T FPD + +SW + CS L
Sbjct: 16 WKHLPREIRRNILTRLPFPDKQNMMLVSWENSQICSTL 53
>U40797-12|AAN84858.1| 230|Caenorhabditis elegans Gex interacting
protein protein9, isoform c protein.
Length = 230
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 105 QEIKFARLLSGNENKVRERVIKTLKKWLQN 194
++I A + + + +RV+ TLK+WL+N
Sbjct: 49 EQIGLATIATWATSTSHKRVVSTLKRWLKN 78
>U40797-11|AAN84857.1| 313|Caenorhabditis elegans Gex interacting
protein protein9, isoform b protein.
Length = 313
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 105 QEIKFARLLSGNENKVRERVIKTLKKWLQN 194
++I A + + + +RV+ TLK+WL+N
Sbjct: 132 EQIGLATIATWATSTSHKRVVSTLKRWLKN 161
>U40797-10|AAK95871.1| 617|Caenorhabditis elegans Gex interacting
protein protein9, isoform a protein.
Length = 617
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 105 QEIKFARLLSGNENKVRERVIKTLKKWLQN 194
++I A + + + +RV+ TLK+WL+N
Sbjct: 436 EQIGLATIATWATSTSHKRVVSTLKRWLKN 465
>AY943817-1|AAY18583.1| 703|Caenorhabditis elegans signal
transducer and activatorof transcription STA-1 protein.
Length = 703
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 253 IPFHTLVKSSSLNSYPL*KQFWSHFFSVLITRSRTLFSFPD 131
I FH K + + P FW FFS++ + L F D
Sbjct: 436 ITFHRFAKQAMRDDLPF--SFWEWFFSIMQLIKQKLLKFWD 474
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 284 WLIRHPHRIKYTLPHSREIIFFEFVSPVKTILEPLFQCFNH 162
W +R R++ + +S ++ + ++ ILE +F+ FNH
Sbjct: 705 WYLRQSDRLQIEVEYSEDLFKKD---TIELILEDMFRIFNH 742
>AL132952-23|CAN99759.1| 703|Caenorhabditis elegans Hypothetical
protein Y51H4A.17c protein.
Length = 703
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 253 IPFHTLVKSSSLNSYPL*KQFWSHFFSVLITRSRTLFSFPD 131
I FH K + + P FW FFS++ + L F D
Sbjct: 436 ITFHRFAKQAMRDDLPF--SFWEWFFSIMQLIKQKLLKFWD 474
>AL132952-22|CAN86928.1| 567|Caenorhabditis elegans Hypothetical
protein Y51H4A.17b protein.
Length = 567
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 253 IPFHTLVKSSSLNSYPL*KQFWSHFFSVLITRSRTLFSFPD 131
I FH K + + P FW FFS++ + L F D
Sbjct: 436 ITFHRFAKQAMRDDLPF--SFWEWFFSIMQLIKQKLLKFWD 474
>AL132952-21|CAB61149.2| 706|Caenorhabditis elegans Hypothetical
protein Y51H4A.17a protein.
Length = 706
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 253 IPFHTLVKSSSLNSYPL*KQFWSHFFSVLITRSRTLFSFPD 131
I FH K + + P FW FFS++ + L F D
Sbjct: 436 ITFHRFAKQAMRDDLPF--SFWEWFFSIMQLIKQKLLKFWD 474
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 284 WLIRHPHRIKYTLPHSREIIFFEFVSPVKTILEPLFQCFNHTFAYFV 144
W+ R P + + +S+E F KTI F CF+H F F+
Sbjct: 912 WISRPPKKFQNFKLYSKEKRKFTR----KTIFNRFFLCFSHIFGLFL 954
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 105 QEIKFARLLSGNE-NKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWK 248
+E +F + L+ N+ KVR+R I LKK L + E EDD ++ K
Sbjct: 101 EETEFQKNLADNDVEKVRQR-IGELKKDLDEKARKNVEMGEDDCYKLVK 148
>AC006807-1|AAK84615.1| 130|Caenorhabditis elegans Hypothetical
protein Y58A7A.1 protein.
Length = 130
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 209 SPVKTILEPLFQCFNHTFAYFVFV 138
SP +++PL Q F T AYF+ +
Sbjct: 68 SPQLDLIDPLLQLFQLTIAYFLML 91
>Z82069-1|CAB04902.1| 667|Caenorhabditis elegans Hypothetical
protein W04A8.1 protein.
Length = 667
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 180 KWLQNCFHRGYEFKEDDFTRV 242
KW+Q C + KE+DF+ +
Sbjct: 173 KWIQECLDNRQKCKENDFSMI 193
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 105 QEIKFARLLSGNE-NKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWK 248
+E +F + L+ N+ KVR+R I LKK L + E EDD ++ K
Sbjct: 95 EETEFQKNLADNDVEKVRQR-IGELKKDLDEKARKNVEMWEDDCYKLVK 142
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 105 QEIKFARLLSGNE-NKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWK 248
+E +F + L+ N+ KVR+R I LKK L + E EDD ++ K
Sbjct: 101 EETEFQKNLADNDVEKVRQR-IGELKKDLDEKARKNVEMWEDDCYKLVK 148
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a
protein.
Length = 1440
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 105 QEIKFARLLSGNE-NKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWK 248
+E +F + L+ N+ KVR+R I LKK L + E EDD ++ K
Sbjct: 95 EETEFQKNLADNDVEKVRQR-IGELKKDLDEKARKNVEMWEDDCYKLVK 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,137,230
Number of Sequences: 27780
Number of extensions: 110061
Number of successful extensions: 337
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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