Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0137
(302 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20600.1 68418.m02446 expressed protein 46 5e-06
At5g67300.1 68418.m08486 myb family transcription factor contain... 29 0.79
At2g31350.2 68415.m03830 hydroxyacylglutathione hydrolase, putat... 27 3.2
At2g31350.1 68415.m03829 hydroxyacylglutathione hydrolase, putat... 27 3.2
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 27 3.2
At1g32550.1 68414.m04017 ferredoxin family protein similar to fe... 27 3.2
At5g41810.2 68418.m05091 expressed protein 26 5.6
At5g41810.1 68418.m05090 expressed protein 26 5.6
At5g26090.1 68418.m03104 hypothetical protein 25 7.4
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 25 7.4
At2g10440.1 68415.m01097 hypothetical protein 25 7.4
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 25 9.7
At5g01550.1 68418.m00070 lectin protein kinase, putative similar... 25 9.7
At3g50140.1 68416.m05481 expressed protein contains Pfam profile... 25 9.7
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 25 9.7
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 25 9.7
At1g07025.1 68414.m00748 mitochondrial substrate carrier family ... 25 9.7
>At5g20600.1 68418.m02446 expressed protein
Length = 532
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 84 EQVAVVAQEIK-FARLLSGNENKVRERVIKT-LKKWLQNCFHRGYEFKEDDFTRVWKGIF 257
EQ + ++ K + L+ + +R+R ++T L+ WL E ++D ++W+GIF
Sbjct: 11 EQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTWLPE----QTEISDEDMKKLWQGIF 66
Query: 258 YAMWMSDKPLVQEDL 302
Y +W +DK L Q +L
Sbjct: 67 YCVWHADKSLYQSEL 81
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 28.7 bits (61), Expect = 0.79
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 120 ARLLSGN-ENKVRERVIKTLKKWLQNCFHRGYEFKED 227
ARLL+G +N V+ TLK+ HRGY+ ED
Sbjct: 84 ARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSED 120
>At2g31350.2 68415.m03830 hydroxyacylglutathione hydrolase, putative
/ glyoxalase II, putative similar to glyoxalase II
isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865
Length = 323
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 184 GSRIVFTGDTNSKKMISRECGRVY 255
GSR +FTGDT M S CG+++
Sbjct: 192 GSRAIFTGDT----MFSLSCGKLF 211
>At2g31350.1 68415.m03829 hydroxyacylglutathione hydrolase, putative
/ glyoxalase II, putative similar to glyoxalase II
isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865
Length = 324
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 184 GSRIVFTGDTNSKKMISRECGRVY 255
GSR +FTGDT M S CG+++
Sbjct: 193 GSRAIFTGDT----MFSLSCGKLF 212
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 168 KTLKKWLQNCFHRGYEFKE 224
K+ KKWL NCF G + K+
Sbjct: 142 KSAKKWLFNCFSAGVKDKD 160
>At1g32550.1 68414.m04017 ferredoxin family protein similar to
ferredoxin from Synechocystis sp. [GI:48019]; contains
Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding
domain
Length = 181
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 142 SFPDNKR--ANFISWATTATCSFLV 74
+FP N+R NF ATTATC F +
Sbjct: 17 NFPINRRYITNFRRGATTATCEFRI 41
>At5g41810.2 68418.m05091 expressed protein
Length = 279
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 107 GDKVRAFVIWKRKQSTRTCD*NTEK-VAPELFS 202
GDK R +V++ + S T +TEK V+PE+ S
Sbjct: 226 GDKDRYYVVYDKSGSLTTIPESTEKEVSPEINS 258
>At5g41810.1 68418.m05090 expressed protein
Length = 288
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 107 GDKVRAFVIWKRKQSTRTCD*NTEK-VAPELFS 202
GDK R +V++ + S T +TEK V+PE+ S
Sbjct: 235 GDKDRYYVVYDKSGSLTTIPESTEKEVSPEINS 267
>At5g26090.1 68418.m03104 hypothetical protein
Length = 401
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 245 PHSREIIFFEFVSPVKTILEP 183
PH+ + F EFV PV ++EP
Sbjct: 336 PHNIFLRFLEFVRPVDKLVEP 356
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 144 NKVRERVIKTLKKWLQNC 197
NKVR+ +IK + WL C
Sbjct: 474 NKVRQHMIKHIDLWLSEC 491
>At2g10440.1 68415.m01097 hypothetical protein
Length = 935
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +3
Query: 132 SGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAM 266
S +E ++R++V+ + + + FH E+K +D ++ FY++
Sbjct: 27 SQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSI 71
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = +3
Query: 81 KEQVAVVAQEIKFARLLSGNENKVRERVIKT 173
K+Q ++ ++++ A+ + +ENK++ V+KT
Sbjct: 59 KKQPLILIKKLRRAKKEASDENKMKPEVVKT 89
>At5g01550.1 68418.m00070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 688
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 293 LYKWLIRHPHRIKY 252
L W I HPHR++Y
Sbjct: 338 LEDWEINHPHRLRY 351
>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 508
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 260 IKYTLPH---SREIIFFEFVSPVKTILEPLFQCFNHTFAYF 147
+K TL H S +F F + V +L LFQ F ++ YF
Sbjct: 464 LKATLKHKYFSNPWAYFSFFAAVILLLLTLFQSFFTSYPYF 504
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 105 QEIKFARLLSGNENKVRERVIKTLKKW 185
Q ++ R + N+ VRE+ +KT+ +W
Sbjct: 774 QRLEMNRQVLANQKAVREKQLKTIFQW 800
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 105 QEIKFARLLSGNENKVRERVIKTLKKW 185
Q ++ R + N+ VRE+ +KT+ +W
Sbjct: 774 QRLEMNRQVLANQKAVREKQLKTIFQW 800
>At1g07025.1 68414.m00748 mitochondrial substrate carrier family
protein contains similarity to mitochondrial carrier
proteins
Length = 166
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 184 HFFSVLITRSRTLFSFPDNKRANFISWATTATCSFLVLT 68
HF ++++ P+N + ISWA TA S+ V T
Sbjct: 93 HFSFYDVSKNFLSTGNPNNPVVHVISWAFTAVWSYAVST 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,711,372
Number of Sequences: 28952
Number of extensions: 100410
Number of successful extensions: 348
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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