Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0136
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.31 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.8  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 541  RLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQRE 681
            R+R  +EQ R      Q++ QQ +   Q++ QQ   ++   +A +RE
Sbjct: 1194 RIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +1

Query: 505 DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 684
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 685 LRNHNI 702
            + H I
Sbjct: 76  SKEHKI 81


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +1

Query: 505 DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 684
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 685 LRNHNI 702
            + H I
Sbjct: 76  SKEHKI 81


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +1

Query: 505 DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 684
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 685 LRNHNI 702
            + H I
Sbjct: 76  SKEHKI 81


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +1

Query: 463 EVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEK 597
           E+ K+ +D     ADK ++ +   + R+      V   + GN+++
Sbjct: 60  EIEKSEDDSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQRGNEQR 104


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 390 LVDVGLAFFLVGLHLGVESLLGGDDEVI 307
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 390 LVDVGLAFFLVGLHLGVESLLGGDDEVI 307
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 17  LMDSDVIFVTINYRLGILGFLSTEDEVV 44


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 390 LVDVGLAFFLVGLHLGVESLLGGDDEVI 307
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 LTRKDSFRRRDPREAEGSRRE 215
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.125    0.321 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,159
Number of Sequences: 438
Number of extensions: 2868
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)