Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0132
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   4.4  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   5.8  

>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 411 LHIFSDKVFFLI*DTKT*AEQNYVYFNFTVRVAFHL 304
           + IFS K++      +T  + N V+F+F   +A HL
Sbjct: 133 IKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHL 168


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 114 ILYKFSSLKSSINNSTRLRIRNKNKTLQWPRLQTRK 7
           I  K S+L SSI++ T    R+     +W R +  K
Sbjct: 152 IFEKLSTLTSSISSRTSTNFRHPEHVFEWDRKEFAK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,627
Number of Sequences: 5004
Number of extensions: 39063
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)