Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0132
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical...    29   3.1  
Z68004-7|CAA91988.2|  237|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical
           protein F53C3.1 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 581 HCRVKYHRLKIKMAPSKINMSLLHNIIINITNELQLNKLLCYM-SVQYQ 438
           HC+VK   LKIK    K N + L+     I    +LNK+L Y+ S  YQ
Sbjct: 235 HCKVKNEVLKIKENTRKDNRAALYK---GIPQTSELNKILDYIDSRAYQ 280


>Z68004-7|CAA91988.2|  237|Caenorhabditis elegans Hypothetical
           protein F47B10.8 protein.
          Length = 237

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 628 YNIFWNYAKLVLILILTY 681
           YN+ WN+  ++L L+  Y
Sbjct: 133 YNVIWNFGMIILFLVFVY 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,051
Number of Sequences: 27780
Number of extensions: 211358
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)