Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0132
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08700.1 68417.m01438 purine permease family protein similar ...    29   3.8  
At3g49490.1 68416.m05409 expressed protein                             28   5.0  

>At4g08700.1 68417.m01438 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 361

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +1

Query: 460 HSNLFSCSSLVMFMIILCNNDILIFDGAIFIFSLWYLTRQCVTNVKLTSE*KFMWVYNIF 639
           HS+  SCS   +  I L     +  D  ++ F L YL+     ++  +S+  F  V++ +
Sbjct: 92  HSSSSSCSFKTLVWIYLSLGFAIGLDNLLYSFGLLYLSAS-TYSILCSSQLAFNGVFSYY 150

Query: 640 WNYAKLVLILILT 678
            N  K+  +++ +
Sbjct: 151 INSQKITCLILFS 163


>At3g49490.1 68416.m05409 expressed protein
          Length = 953

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 641 QKILYTHINFHSEVNFTFVTHCRVKYHRLKIKMAPSKINMSLLHNIIINITNELQLN 471
           Q +LY ++   +E      T C  +YHR+K ++   K+N   +    ++   E  LN
Sbjct: 635 QTLLYKNLWLETEAALCSTT-CMARYHRIKNEIGNLKLNNKEISADAVSFMQEPSLN 690


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,844,281
Number of Sequences: 28952
Number of extensions: 173513
Number of successful extensions: 340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)