Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0131
(680 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 63 2e-12
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 61 7e-12
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 60 1e-11
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 59 4e-11
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 59 4e-11
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 44 1e-06
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.25
AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein. 24 1.0
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 5.3
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 21 7.1
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 21 9.3
AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 21 9.3
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 62.9 bits (146), Expect = 2e-12
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +3
Query: 81 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 257
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 258 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 434
+LW+PDV++ N+A G + V +NGS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 435 TFKFGSRMHNSDEMDFVID 491
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 61.3 bits (142), Expect = 7e-12
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +3
Query: 81 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 257
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 258 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 434
+LW+PDV++ N+A G + V +NGS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 435 TFKFGSRMHNSDEMDFVID 491
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 60.5 bits (140), Expect = 1e-11
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +3
Query: 81 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 257
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 258 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 434
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 435 TFKFGSRMHNSDEMDFVID 491
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 58.8 bits (136), Expect = 4e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +3
Query: 180 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 353
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 354 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 491
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 58.8 bits (136), Expect = 4e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +3
Query: 180 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 353
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 354 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 491
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 44.0 bits (99), Expect = 1e-06
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Frame = +3
Query: 36 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 203
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 204 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 356
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 357 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 452
+ RL I+ M L P D Q C + S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.25
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 321 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 422
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein.
Length = 697
Score = 24.2 bits (50), Expect = 1.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 626 RGASPERHLEHCHASFHLATVLAL 555
+ +P L HCH FH+ +AL
Sbjct: 593 KATNPGYWLFHCHIEFHVEVGMAL 616
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 5.3
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 368 LYPG-DGAVIRYTGAESVVPGGGC 300
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1
Query: 626 RGASPERHLEHCHASFHL 573
R +P L HCH FH+
Sbjct: 660 RADNPGYWLFHCHFLFHI 677
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 21.0 bits (42), Expect = 9.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 145 RMLACLKCRVRLTTILESGGDSRS 74
R+ C++C ILE GD S
Sbjct: 509 RLFTCMECPNNYPWILEPTGDGFS 532
>AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein.
Length = 717
Score = 21.0 bits (42), Expect = 9.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1
Query: 626 RGASPERHLEHCHASFHL 573
R +P L HCH FH+
Sbjct: 660 RANNPGFWLFHCHFLFHI 677
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,273
Number of Sequences: 336
Number of extensions: 3973
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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