Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0126
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.4  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   3.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = +1

Query: 415 HLHVSTYTYRFPKLQMIERLLVARRPFPLHQDGWASKGSAKRGGIC*QLPERLRRRPNNS 594
           HL   TY    P  Q +         F LH  G A   +A  GG+  Q+P    +R    
Sbjct: 234 HLLQDTYKSMLPGAQTVGA------SFGLHATGSAPSPTAGAGGLPPQVPSPRSQRRYTG 287

Query: 595 RA 600
           RA
Sbjct: 288 RA 289


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 372 PRG-PSGLVEIYENYSDDDVTAYTDGLSN 289
           P G  S L  +  NY DD +   T+G+ N
Sbjct: 593 PEGMKSQLFVMISNYDDDKIDQSTEGVCN 621


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = -3

Query: 173 CKLRHLRCRCWKCKNDGRSRTISEEIPYKC 84
           C L+   C    CKN G  + + +    +C
Sbjct: 141 CSLKDSHCDHTTCKNGGTCQDLGKTFMCRC 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,839
Number of Sequences: 336
Number of extensions: 3465
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)