Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0126
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   1.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   3.4  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.4  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   4.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.9  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.9  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +1

Query: 85  HLYGISSE------IVRDRPSFLHFQHLHLRCLSLQTLYHYPQTMFAVSLFADKNVASIV 246
           HLY ++        ++  + SFLH  + +L C+S   + +    +   +LF   ++A I+
Sbjct: 658 HLYSLTGSRLLPPIMIESKASFLHCNNAYLLCISSSGMVYAWNVVNKTALFTANSLAPIL 717

Query: 247 S 249
           S
Sbjct: 718 S 718


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 49  TVAFVKTFLKPEHLYGISSEIVRDRPSFLH----FQHLHLRCLSLQTLYHYPQTMFAVSL 216
           TVAF+    +  +  G       D   FL       H  LRCL L+ ++ YP+    V+ 
Sbjct: 137 TVAFIMRLYRETNKTGFIKAFSDDPEQFLMGINALSHC-LRCLFLRHVFIYPRFHVVVAE 195

Query: 217 FADKNVASIV 246
             +K+ A++V
Sbjct: 196 SLEKSPANVV 205


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 303 LCTPSRHRHYNFHKFLLGLTGLEVLRVSFHGELCTLEPF 419
           L T  RH H+N+H +++ L  L   R+   G   T+E +
Sbjct: 707 LFTKDRHVHFNYHGYVMDLKALLFDRI--QGTRVTMEGY 743


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +3

Query: 135 TFPTPAPEVPELTDIVSLPA---DYVCCIAICGQKCSFY 242
           T P   P   ++  IV +PA     + C+AI    C FY
Sbjct: 300 TSPLLDPRTTQIVSIVPIPAYESQQIYCVAITSTGCRFY 338


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 366 LEVLRVSFHGELCTLEPFTRLNLYLSFSKTADD*KITGGPEAFPA-SPGRVGEQRLSQEG 542
           L ++  +F   L + +  +  N Y S S T D   +T  PEAFP    G +         
Sbjct: 211 LAIVSDNFSLPLSSSQSSSLANSYESLSTTLDKPSLTLDPEAFPTHKRGSIALIGSGPGS 270

Query: 543 WDLLTTA 563
            DLLT A
Sbjct: 271 PDLLTVA 277


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 606 FANESTTGSESRPTGEDPARNSVG 677
           FA+  T G E RP+  +PA +  G
Sbjct: 182 FASAQTQGQEHRPSSPNPAEHMTG 205


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 384 LREVPRGPSGLVEIYENYSDDDVTAYTDGLSNLVHETDLNDDDSITDN 241
           L+ +  G   L E  ++  +D+  +Y D +SN+V+E +    D I  N
Sbjct: 350 LQSLADGTDELEEQEDSLMEDEDLSYMDDMSNVVNEDENLIIDEIPSN 397


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 HFQHLHLRCLSLQTLYHYPQTMFAVSLF 219
           H++H+HL   S   +YH P   F+ S F
Sbjct: 39  HYEHIHLFTSSQSYMYH-PNARFSYSPF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,802
Number of Sequences: 5004
Number of extensions: 55556
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)