Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0126
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 32 0.49
09_02_0287 + 6921306-6921493,6922759-6922852,6922912-6922981,692... 30 2.0
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 29 2.6
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 29 3.5
04_04_0620 + 26656072-26656417,26656585-26657396 29 3.5
01_05_0542 + 23086931-23087014,23087116-23087206,23087624-230876... 29 3.5
05_03_0393 + 13435581-13435745,13435804-13436418,13437283-134373... 28 6.1
04_04_0785 + 28048368-28048372,28049387-28049447,28050083-280501... 28 6.1
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 28 6.1
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827 28 6.1
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376... 28 8.0
08_01_0643 - 5565687-5566365,5567679-5568040 28 8.0
06_03_0411 - 20520823-20521674 28 8.0
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 571 GARAVVSKSHPSWLSLCSPTRPGEAGKASGPPVIFQSSAVLEN 443
G +A +S P W S SP PGEA V+FQ + +N
Sbjct: 22 GEQAGISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQN 64
>09_02_0287 +
6921306-6921493,6922759-6922852,6922912-6922981,
6923429-6923496,6923575-6923628,6923878-6923895
Length = 163
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 73 LKPEHLYGISSEIVRDRPSFLHFQHLHLRCLSLQTLYHY 189
L P H G+ + DRP LH HL C+ L + HY
Sbjct: 67 LVPNHALGLLLDDDHDRP-LLHHDPRHLVCMVLHYVLHY 104
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 138 FPTPAPEVPELTDIVSLPADYVCCIAICGQKCSFYCQ 248
FP+ A +P D V+LP+ C CG+ F Q
Sbjct: 75 FPSKAGGIPAWLDPVNLPSGNSRCCGFCGEPLQFVLQ 111
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 541 GGIC*QLPERLRRRPNNSRAIASRMNLLPDRNRDPLEKIRRETQWA 678
GG+ + P RRR N+ S N +N DP+E +RR+ + A
Sbjct: 259 GGVKDRRPVAPRRRGNSVSPSKSGPNSTITQNDDPMESVRRKAEKA 304
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 94 GISSEIVRDRPSFLHFQHLH-LRCLS---LQTLYHYPQTMFAVSLFADKNV 234
G E +R +FL +H+H L S L + +PQ +FA +F D+++
Sbjct: 39 GADGETLRQMLAFLGSEHIHQLNATSAGLLAEMQAWPQLVFAAGIFVDRSL 89
>01_05_0542 +
23086931-23087014,23087116-23087206,23087624-23087650,
23087742-23087895,23087958-23088023,23088249-23088292,
23088592-23088683,23088779-23088926,23089356-23089420,
23089495-23089592,23090368-23090392
Length = 297
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 61 VKTFLKPEHLYGISSEIVRDRPSFLHFQ-HLHLRCLSLQTLYHYPQTMFAVSLFADKNVA 237
+ T LKPE++ +SSE +R S + Q +H +CL + F + F ++ +
Sbjct: 163 IHTDLKPENILLVSSEYIRVPGSKKNSQDEMHFKCLPKSSAIKLID--FGSTAFDNQEHS 220
Query: 238 SIVSDR 255
SIVS R
Sbjct: 221 SIVSTR 226
>05_03_0393 +
13435581-13435745,13435804-13436418,13437283-13437349,
13437605-13438239
Length = 493
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 327 DDDVTAYTDGLSNLVHETDLNDDDSI 250
D D DG +L H+TDL+DD I
Sbjct: 321 DSDANLDNDGAVDLDHDTDLDDDTGI 346
>04_04_0785 +
28048368-28048372,28049387-28049447,28050083-28050151,
28050249-28050303,28050386-28050433,28050534-28050629,
28050895-28051051,28051250-28051340,28051431-28051559,
28051650-28051803,28052147-28052241,28052316-28052498
Length = 380
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 354 LVEIYENYSDDDVTAYTDGLSNLVHETDLNDDDSITDNRSYI 229
L IY++Y+D T N H LND+ +++ S++
Sbjct: 218 LTSIYDDYADKSTTIVEAEFYNASHLLPLNDEQIVSEASSHL 259
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 138 FPTPAPEVPELTDIVSLPADYVCCIAICGQKCSFYCQ 248
FP A VP D V+LP+ C CG+ F Q
Sbjct: 64 FPNKAGGVPAWLDPVNLPSGKSRCCDFCGEPLRFVLQ 100
>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
Length = 146
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 591 VVRSPAEALGQLLANPTPLG*AFARPPVLVKRERP 487
+ R+ + LG+LLA+P+PL A PP L+ R +P
Sbjct: 7 LARAGSSLLGRLLASPSPLR-AGLPPPSLLSRIQP 40
>12_02_0093 +
13536684-13536782,13537055-13537057,13537626-13537654,
13539481-13539572,13539979-13540049,13540178-13540266,
13540896-13541019,13541111-13541394,13541831-13541960,
13542482-13543111
Length = 516
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 46 CTVAFVKTFLKPEHLYGISSEIVRDRPSFLHFQHLHLR 159
C V + KP H+ IS+EIV S HF +HLR
Sbjct: 218 CRVNYHALRFKP-HIMKISNEIVNKLRSEGHFMSIHLR 254
>08_01_0643 - 5565687-5566365,5567679-5568040
Length = 346
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 381 REVPRGPSGLVEIYENYSDDDVTAYTDGLSNLVHETDLNDDD 256
R +P P G V Y YSD + + Y+D ++ E D +DDD
Sbjct: 281 RRLPISP-GFVRYYSVYSDPEYSMYSDEWTS--EEFDDDDDD 319
>06_03_0411 - 20520823-20521674
Length = 283
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 390 ENLREVPRGPSGLVEIYENYSDDDVTAYTDGLSNL 286
E REV R P G + SD+ TA DGL L
Sbjct: 63 EEEREVKRSPPGTLRHRRTRSDEAATAALDGLEPL 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,669
Number of Sequences: 37544
Number of extensions: 393244
Number of successful extensions: 1129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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