Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0126
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ...    33   0.18 
At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing ...    29   2.9  
At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein con...    29   2.9  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    28   6.7  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    28   6.7  
At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing ...    27   8.9  
At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1 ...    27   8.9  

>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 304

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 339 ENYSDDDVTAYTDGLSNLVHETDLNDDDSITDNRSYIFVRK 217
           E+  DDDV + T  + NL+ ++D +DDD   +N  Y   RK
Sbjct: 180 EDNEDDDVKSLTSDVENLIGDSDEDDDDYGDENAYYGGKRK 220


>At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing
           protein similar to DNA-binding protein DAG1/BBFa
           GI:4581965 [Arabidopsis thaliana]
          Length = 294

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +2

Query: 350 TRPDGPRGTSRKFSWRTLYTRTIYTSQLIPIVFQNCR*LKDYWWPGGLSRFTRTGGRAKA 529
           TRP  PR   R  S  T +    Y +  +      C+  + YW  GG  R    GG ++ 
Sbjct: 62  TRPQEPRNCPRCNSSNTKFC--YYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRK 119

Query: 530 QPRGVGFANNCPSASAGDL 586
             + + F N+  S+S  +L
Sbjct: 120 NKK-LPFPNSSTSSSTKNL 137


>At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to beta-glucosidase GB:AAC31962 [Arabidopsis
           thaliana]; similar to thioglucoside glucohydrolase
           (GI:984052) [Arabidopsis thaliana]
          Length = 531

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 405 YKVLHENLREVPRGPSGLVEIYENYSDDDVTAYTDGLSNLVHETDLNDDDSITDNRSYIF 226
           Y V  + LR+V      L  I ENY+D ++    +G    + E D+  D     NR Y  
Sbjct: 393 YPVCADGLRKV------LKYIKENYNDPEIIVTGNGYKETLEEKDVLPDALSDSNRKYYH 446

Query: 225 VR 220
           +R
Sbjct: 447 MR 448


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/50 (20%), Positives = 23/50 (46%)
 Frame = +1

Query: 142 QHLHLRCLSLQTLYHYPQTMFAVSLFADKNVASIVSDRVVIIKISFMNKI 291
           QHLH++CL  + +Y  P +++         +  ++ D    + +  +  I
Sbjct: 595 QHLHVQCLPAKYIYEMPLSLYICETLVYLKLCRVMLDDAEFVSLPCLKTI 644


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
            dehalogenase-like hydrolase family protein /
            heavy-metal-associated domain-containing protein similar
            to cadmium efflux pump protein from Geobacillus
            stearothermophilus [GI:16753175], cadmium resistance
            protein B from Staphylococcus aureus [GI:14020985];
            T20K24.13 has been merged with T20K24.12 per suggestion
            of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 204  CCIAICGQKCSFYCQ**SRHH*DQFHEQDYLTHLCTPSRHRHYNFH 341
            CC     + C+  C+  ++ H  +   + Y   LC+   H H++ H
Sbjct: 1121 CCKVKIPEACASKCRDRAKRHSGKSCCRSYAKELCSHRHHHHHHHH 1166


>At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP4 gi:5059396
           from [Arabidopsis thaliana]; EMBL:AF155817
          Length = 307

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 455 CR*LKDYWWPGGLSRFTRTGGRAKAQPRGVGFANNCPSASAGDLTTQEQ 601
           C+  + YW  GG+ R    GG  +   R        PS+S+ D  T  Q
Sbjct: 78  CKNCRRYWTKGGVLRNVPVGGGCRKAKRSK--TKQVPSSSSADKPTTTQ 124


>At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1
           (PGIP1) identical to polygalacturonase inhibiting
           protein 1 (PGIP1) [Arabidopsis thaliana]
           gi|7800199|gb|AAF69827; contains leucine rich-repeat
           (LRR) domains Pfam:PF00560, INTERPRO:IPR001611
          Length = 330

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 345 FLLGLTGLEVLRVSFHGELCTLEPFTRLNLYLSFSKTADD*KITGG-PEAFPASPGRVGE 521
           F+  L  LE L +SF+ +L    P +   L    +      K+TG  PE+F + PG V +
Sbjct: 138 FISQLKNLEFLELSFN-DLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPD 196

Query: 522 QRLS 533
            RLS
Sbjct: 197 LRLS 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,942
Number of Sequences: 28952
Number of extensions: 301344
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)