Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0125
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   248   4e-66
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    28   7.4  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    28   7.4  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    27   9.8  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    27   9.8  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    27   9.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  248 bits (606), Expect = 4e-66
 Identities = 119/212 (56%), Positives = 148/212 (69%)
 Frame = +1

Query: 64  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 243
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 244 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 423
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH          
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 424 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 603
                          QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI K
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEK 181

Query: 604 VYKSQRLRAGKGKMRNRRRIQRKVPLIIFNKD 699
           VY S+R RAGKGK+RNR+  Q+  P++I+ +D
Sbjct: 182 VYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +1

Query: 196 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 366
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 367 PTKP 378
             KP
Sbjct: 197 APKP 200


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -2

Query: 687 DYEGHLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 514
           D E  L +++  VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 260 DVEAFLNIES--VAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 352 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 269
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 261 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 371
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 517 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKVPLIIFN 693
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 694 KD 699
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 517 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKVPLIIFN 693
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 694 KD 699
           KD
Sbjct: 473 KD 474


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 67  RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 240
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 241 TSAESWGTGRAVARIPRVRGGGTHRSGQG 327
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 67  RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 240
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 241 TSAESWGTGRAVARIPRVRGGGTHRSGQG 327
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 67  RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 240
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 241 TSAESWGTGRAVARIPRVRGGGTHRSGQG 327
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,923
Number of Sequences: 27780
Number of extensions: 342448
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)