Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0125
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 241 4e-64
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 240 7e-64
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.2
At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to a... 29 3.9
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.2
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 6.8
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 9.0
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 9.0
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 9.0
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 9.0
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 241 bits (589), Expect = 4e-64
Identities = 116/219 (52%), Positives = 144/219 (65%), Gaps = 2/219 (0%)
Frame = +1
Query: 49 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 222
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 223 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 402
K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Query: 403 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLK 582
ARGH IE +PE+PLVV+D + + KT A+ L+++
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180
Query: 583 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKVPLIIFNKD 699
A+ D K S +R GKGKMRNRR I RK PL+++ +
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTE 219
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 240 bits (587), Expect = 7e-64
Identities = 117/216 (54%), Positives = 140/216 (64%), Gaps = 2/216 (0%)
Frame = +1
Query: 58 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 231
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 232 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 411
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124
Query: 412 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 591
ARGH IE +PE+PLVV+D + + KT A+ L+++ A+
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYD 184
Query: 592 DILKVYKSQRLRAGKGKMRNRRRIQRKVPLIIFNKD 699
D K S +R GKGKMRNRR I RK PL++F +
Sbjct: 185 DAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTE 220
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 73 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 219
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to
alpha-expansin 3 GI:6942322 from [Triphysaria
versicolor]; alpha-expansin gene family, PMID:11641069
Length = 256
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 528 FVGYNQGKFGNLFNNVSSSLNECWDAGSSN---GCRQGRSPLSEVDATMPTPP 379
F GY+ G G LFN SS C + N C QG SP V AT PP
Sbjct: 61 FAGYSAGLSGKLFNR-GSSCGACLEVRCVNHIRWCLQG-SPSVVVTATDFCPP 111
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 124 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 219
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 124 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 219
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 352 HHDTCYRRHPDRTYEYHHHGHAEF 281
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 364 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVRYPMIRH 245
R++ H + +H D + E+HHH H R+H + H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 364 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVRYPMIRH 245
R++ H + +H D + E+HHH H R+H + H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 217 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 381
+ + G + +AE + + + ++P G G G+ G FGN GG F W
Sbjct: 81 IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 352 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 269
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,089
Number of Sequences: 28952
Number of extensions: 325192
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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