Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0124
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 256 8e-69
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 158 3e-39
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 138 3e-33
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 132 2e-31
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 122 2e-28
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 121 4e-28
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 118 3e-27
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 106 2e-23
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 105 2e-23
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 101 4e-22
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 73 3e-13
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 66 2e-11
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 64 7e-11
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 64 1e-10
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 64 1e-10
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 64 1e-10
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 61 8e-10
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 60 1e-09
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 60 1e-09
At1g77980.1 68414.m09087 MADS-box family protein MADS-box protei... 33 0.19
At1g22130.1 68414.m02766 MADS-box family protein similar to MADS... 29 2.3
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ... 27 9.3
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 27 9.3
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila... 27 9.3
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila... 27 9.3
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 256 bits (628), Expect = 8e-69
Identities = 122/210 (58%), Positives = 162/210 (77%)
Frame = +2
Query: 74 SVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSD 253
++AFDE+GRPFIILR+QD++ RL G DA K++I A + +A LR+SLGP+G+DK++ D
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPD 61
Query: 254 GDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLD 433
GD+T+TNDGATIL+ MDV++QI KL+V+L++SQD EIGDGTTGVVV+AGALLEQA LD
Sbjct: 62 GDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLD 121
Query: 434 KGIHPIRIADGYEMAAALALTHLDSVS*AFPVNKNTRENLIKVAMTTLGSKVVVKCHRLM 613
+GIHPIRIA+GYEMA+ +A+ HL+ ++ F + N E L++ MTTL SK+V +C R +
Sbjct: 122 RGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSL 181
Query: 614 AEIXXXXXXXXXXXETRDVNFELIKVEGKV 703
AEI E RDVN +LIKVEGKV
Sbjct: 182 AEIAVKAVLAVADLERRDVNLDLIKVEGKV 211
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 158 bits (384), Expect = 3e-39
Identities = 78/135 (57%), Positives = 100/135 (74%)
Frame = +2
Query: 299 MDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMA 478
MDV++QI KL+V+L++SQD EIGDGTTGVVV+AGALLEQA LD+GIHPIRIA+GYEMA
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 479 AALALTHLDSVS*AFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXE 658
+ +A+ HL+ ++ F + N E L++ MTTL SK+V +C R +AEI E
Sbjct: 61 SRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLE 120
Query: 659 TRDVNFELIKVEGKV 703
RDVN +LIKVEGKV
Sbjct: 121 RRDVNLDLIKVEGKV 135
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 138 bits (335), Expect = 3e-33
Identities = 70/153 (45%), Positives = 105/153 (68%)
Frame = +2
Query: 164 SHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLA 343
++I +AR ++ +RTSLGP+G+DK++ +++G+V +TNDGATIL M+V K+LV+L+
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELS 91
Query: 344 QSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVS*AF 523
+SQD GDGTT VVV+AGALL++ +LL GIHP I+D A A+ L ++ A
Sbjct: 92 KSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAM--AV 149
Query: 524 PVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEI 622
PV R++L+K A T+L SKVV + L+A +
Sbjct: 150 PVELTDRDSLVKSASTSLNSKVVSQYSTLLAPL 182
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 132 bits (320), Expect = 2e-31
Identities = 65/152 (42%), Positives = 101/152 (66%)
Frame = +2
Query: 137 RLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQ 316
R +G D ++ A + +++ ++TSLGP GLDK++V GDVT+TNDGATIL+M++VEH
Sbjct: 14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHP 73
Query: 317 IGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALT 496
K+LV+LA+ QD E+GDGTT VV++A LL++A++L+ IHP I GY +A +
Sbjct: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCK 133
Query: 497 HLDSVS*AFPVNKNTRENLIKVAMTTLGSKVV 592
+++ V K + LI A T++ SK++
Sbjct: 134 YIEE-KLVTKVEKLGKVPLINCAKTSMSSKLI 164
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 122 bits (295), Expect = 2e-28
Identities = 61/152 (40%), Positives = 94/152 (61%), Gaps = 3/152 (1%)
Frame = +2
Query: 146 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGK 325
G + S+I A + +RT+LGPRG+DKL+ G VT++NDGATI+K++D+ H K
Sbjct: 21 GKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAK 80
Query: 326 LLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLD 505
+LV +A+SQD E+GDGTT VV+LA L++A ++ G+H + Y A+ LA+ +
Sbjct: 81 ILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVK 140
Query: 506 SVS*AFPVNKNTREN---LIKVAMTTLGSKVV 592
++ + K+ E L K A TTL SK++
Sbjct: 141 ELAVSIE-GKSVEEKKGLLAKCAATTLSSKLI 171
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 121 bits (292), Expect = 4e-28
Identities = 61/174 (35%), Positives = 105/174 (60%)
Frame = +2
Query: 101 PFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDG 280
P ++L D KR +G+ +IQA++ +A +RT+LGPR + K+++ + G + VTNDG
Sbjct: 4 PVLVLSDS--LKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDG 61
Query: 281 ATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIA 460
IL+ +DV H K +++L+++QD+E+GDGTT V+VLAG +L A L+K HP I
Sbjct: 62 NAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVIC 121
Query: 461 DGYEMAAALALTHLDSVS*AFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEI 622
Y A ++ LD + A ++ N R ++ + + +G+K + L+A++
Sbjct: 122 RAYIKALEDSIAVLDKI--AMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADL 173
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 118 bits (285), Expect = 3e-27
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Frame = +2
Query: 110 ILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGD--VTVTNDGA 283
I +D +++ G A + A I+ ++++LGP+G+DK++ S+ VTVTNDGA
Sbjct: 6 IFKDDASEEK--GERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGA 63
Query: 284 TILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIAD 463
TILK + +++ K+LV +++ QDDE+GDGTT VVVLAG LL +A L+ IHP+ I
Sbjct: 64 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIA 123
Query: 464 GYEMAAALALTH-LDSVS*AFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEI 622
GY MA+ A L V + R +L+K+AMTTL SK++ + AE+
Sbjct: 124 GYRMASECARNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEM 177
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 106 bits (254), Expect = 2e-23
Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +2
Query: 140 LTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI 319
L + A+ I AA+ + L+++LGP+G K++V GD+ +T DG T+LK M +++
Sbjct: 13 LNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPT 72
Query: 320 GKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTH 499
++ + A +QDD GDGTT V+ G L++Q+ +D+G+HP + DG+E+A L
Sbjct: 73 AIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQF 132
Query: 500 LDSVS*AFPVNKNTRENLIK-VAMTTLGSKV 589
LD+ + + ++K VA TTL +K+
Sbjct: 133 LDNFKTPVVMGDEVDKEILKMVARTTLRTKL 163
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 105 bits (253), Expect = 2e-23
Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +2
Query: 140 LTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI 319
L + A+ I AA+ + L+++LGP+G K++V GD+ +T DG T+LK M +++
Sbjct: 13 LNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPT 72
Query: 320 GKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTH 499
++ + A +QDD GDGTT V+ G L++Q+ +D+G+HP + DG+E+A L
Sbjct: 73 AIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQF 132
Query: 500 LDSVS*AFPVNKNTRENLIK-VAMTTLGSKV 589
LD+ + + ++K VA TTL +K+
Sbjct: 133 LDTFKTPVVMGDEPDKEILKMVARTTLRTKL 163
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 101 bits (243), Expect = 4e-22
Identities = 48/127 (37%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Frame = +2
Query: 134 KRLTGTD-AIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE 310
+ L+G D A+ +I+A +++++ RTSLGP G++K++++ + VTND ATI+ ++++
Sbjct: 20 RHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQ 79
Query: 311 HQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALA 490
H KLLV A++Q +EIGDG + AG LL+ A L+ G+HP I GY A + A
Sbjct: 80 HPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKA 139
Query: 491 LTHLDSV 511
+ L+ +
Sbjct: 140 VEILEQL 146
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/54 (57%), Positives = 45/54 (83%)
Frame = +2
Query: 74 SVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDK 235
++AFDE+GRPFIILR+QD++ RL G DA K++I A + +A LR+SLGP+G++K
Sbjct: 2 ALAFDEFGRPFIILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Frame = +2
Query: 155 AIKSHIQA-ARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQIG 322
++ +QA A +A L +LGP+G + ++ + G + NDG T+LK +++E +G
Sbjct: 50 SVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVG 109
Query: 323 -KLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTH 499
KL+ Q +D GDG+T ++LA L+ + ++ G +PI++A G E +
Sbjct: 110 VKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLE 169
Query: 500 LDSVS 514
L S+S
Sbjct: 170 LKSMS 174
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 64.5 bits (150), Expect = 7e-11
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Frame = +2
Query: 155 AIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI----G 322
AIK ++A + +LGP+G + ++ S G + NDG T+ + +++E +
Sbjct: 63 AIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGA 122
Query: 323 KLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHL 502
KL+ Q A +D GDGTT VVLA L+ + ++ G +P+ I G E + L
Sbjct: 123 KLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAEL 182
Query: 503 DSVS 514
+S
Sbjct: 183 KKMS 186
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Frame = +2
Query: 98 RPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTND 277
RP I+ ++ GT I+ ++A + +LGP+G + ++ S G + ND
Sbjct: 45 RPAIVCAAKELHFNKDGT-TIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVND 103
Query: 278 GATILKMMDVEHQI----GKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIH 445
G T+ + +++E + KL+ Q A +D GDGTT VVLA + + ++ G +
Sbjct: 104 GVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGAN 163
Query: 446 PIRIADGYEMAAALALTHLDSVS 514
P+ I G E A + L +S
Sbjct: 164 PVLITRGIEKTAKALVNELKLMS 186
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Frame = +2
Query: 185 QIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI----GKLLVQLAQSQ 352
++A + +LGP+G + ++ S G + NDG T+ + +++E + KL+ Q A
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 136
Query: 353 DDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVS 514
+D GDGTT VVLA + + ++ G +P+ I G E A +T L +S
Sbjct: 137 NDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMS 190
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Frame = +2
Query: 185 QIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI----GKLLVQLAQSQ 352
++A + +LGP+G + ++ S G + NDG T+ + +++E + KL+ Q A
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 136
Query: 353 DDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVS 514
+D GDGTT VVLA + + ++ G +P+ I G E A +T L +S
Sbjct: 137 NDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMS 190
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 60.9 bits (141), Expect = 8e-10
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Frame = +2
Query: 146 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVE---HQ 316
G A + +Q ++A ++ ++GP+G + ++ SS G +T DG T+ K + +
Sbjct: 39 GIGARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKN 98
Query: 317 IG-KLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALAL 493
IG +L+ Q+A + + GDGTT VL A+L + + G++ + + G MA A +
Sbjct: 99 IGAELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVV 158
Query: 494 THLDS 508
+ L S
Sbjct: 159 SDLKS 163
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Frame = +2
Query: 146 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI-- 319
G +A ++ +A ++ ++GP+G + ++ S G VT DG T+ K ++ + +I
Sbjct: 39 GVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKN 98
Query: 320 --GKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALAL 493
L+ Q+A + +D GDGTT VL A+ + + G++ + + G MA +
Sbjct: 99 VGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVV 158
Query: 494 THLDS 508
T+L S
Sbjct: 159 TNLKS 163
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Frame = +2
Query: 146 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQI-- 319
G +A ++ +A ++ ++GP+G + ++ S G VT DG T+ K ++ + +I
Sbjct: 40 GVEARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKN 99
Query: 320 --GKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALAL 493
L+ Q+A + +D GDGTT VL A+ + + G++ + + G ++A +
Sbjct: 100 VGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVV 159
Query: 494 THLDS 508
T+L S
Sbjct: 160 TNLQS 164
>At1g77980.1 68414.m09087 MADS-box family protein MADS-box protein
AGL66
Length = 332
Score = 33.1 bits (72), Expect = 0.19
Identities = 25/102 (24%), Positives = 50/102 (49%)
Frame = +2
Query: 53 KMALFPGSVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLD 232
+++LF G ++ +I L DQ+R+ L D + +++ LRT L
Sbjct: 53 RLSLFSGKTRIEDVFSRYINLSDQERENALVFPDQSRRPDFQSKEYL--LRT------LQ 104
Query: 233 KLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDD 358
+L +D + +TN A + ++EH++ KL QL ++++
Sbjct: 105 QLKAENDIALQLTNPTAINSDVEELEHEVYKLQQQLLMAEEE 146
>At1g22130.1 68414.m02766 MADS-box family protein similar to
MADS-box protein (ZAP1) GI:939784 from [Zea mays]
Length = 335
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/102 (25%), Positives = 46/102 (45%)
Frame = +2
Query: 53 KMALFPGSVAFDEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLD 232
+++LF G ++ FI L Q+R+ L D Q R L R L
Sbjct: 53 RLSLFSGKTRIEDVFSRFINLPKQERESALYFPD------QNRRPDIQNKECLL--RILQ 104
Query: 233 KLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLVQLAQSQDD 358
+L +D + VTN A + ++EH++ +L QL ++++
Sbjct: 105 QLKTENDIALQVTNPAAINSDVEELEHEVCRLQQQLQMAEEE 146
>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase FMO3 [Rattus norvegicus]
GI:12006730; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 461
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 275 DGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNL 427
+G T++ ++D E Q+G L V +++ DE+G T +V + +NL
Sbjct: 32 EGHTVV-VLDREKQVGGLWVYTPETESDELGLDPTRPIVHSSVYKSLRTNL 81
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 305 VEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQAS--NLLDKGIHP 448
+E + LVQ+ +S D +I DG+T +V L+ + L S +L+ G+ P
Sbjct: 263 IEGREENYLVQVIRSPDGKISDGSTNLVALSFSDLFPCSMDDLVPVGVGP 312
>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 251
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = -3
Query: 461 RLYESDGYLCPTDLRLAQ------GVHQQEQQPLWYHHQ--FRHLDSEPIAQVVYQ 318
RL +DGY P L Q G H +QQ H Q F+ L+ EPI Q+ YQ
Sbjct: 172 RLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQ---HSQAFFQPLECEPILQIGYQ 224
>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 250
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = -3
Query: 461 RLYESDGYLCPTDLRLAQ------GVHQQEQQPLWYHHQ--FRHLDSEPIAQVVYQ 318
RL +DGY P L Q G H +QQ H Q F+ L+ EPI Q+ YQ
Sbjct: 171 RLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQ---HSQAFFQPLECEPILQIGYQ 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,632
Number of Sequences: 28952
Number of extensions: 351922
Number of successful extensions: 879
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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