Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0123
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    54   3e-08
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    50   3e-07
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    33   0.041
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   4.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.1  
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    26   6.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   6.1  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   8.1  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   8.1  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +2

Query: 329 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL 466
           MG  L++P T+K++ +G    + YG++SMQGWR+ MEDAH A L++
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSM 46



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 18/48 (37%), Positives = 31/48 (64%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDK 638
           FAV+DGH G +V+  C  NL + + +  +F++ D   A+++ FL+ DK
Sbjct: 58  FAVYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADK 105


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +2

Query: 329 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLS 481
           MG  L++P   K++ SG    L +GV+ MQGWR+ MEDAH A L    + S
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNS 51



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSE 650
           F VFDGH G RV+ +C ++L + I     F + +  EA+++GFL  D  + +
Sbjct: 59  FGVFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQ 110


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +3

Query: 498 AVFDGHAGARVSAHCAENLLECILQTEEFRRED---IAEAIRTGFLDLDKKMSE 650
           AV+DGHAG + S +C +NL + +L  E+ R E    + + +   F++++ K+++
Sbjct: 106 AVYDGHAGIQASDYCQKNLHKVLL--EKVRNEPDRLVTDLMDETFVEVNSKIAK 157


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 525  RVSAHCAENLLECI---LQTEEFRREDIAEAIRTGFLDLDKKMSEL 653
            RV     +NL  C+   +   +   E I  A+R GFL L+KK+  +
Sbjct: 1041 RVLKFVYDNLASCLAHEINAADSSSEQICNALRRGFLRLNKKLGNV 1086


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 629 IQETSTDCFSYVFTPKLLRLQNTFKKIFCTVCGDPSSRMSIKHGESTTSPRVYRSE 462
           +++  T+  S     KLL   +T K  FC   GDP   +     EST S  V   E
Sbjct: 299 LRQNGTNASSLSHRRKLLTSHSTLKICFCRSRGDPPIVLESIAFESTDSLTVVWKE 354


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 630  NPGNQYGL---LQLCLHAETPPSAEYIQEDFLHSVRR 529
            N G++ G+   L+  +++ TP   E   +DF+++VRR
Sbjct: 1957 NSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRR 1993


>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 579 EFRREDIAEAIRTGFLDLDKKMSELPELSNGKR 677
           +F + D+A+ + T F+ +D  +++LP +S   +
Sbjct: 55  QFAQRDLAKDLVTKFMQIDTLINQLPGISTAPK 87


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 590  TPKLLRLQNTFKKIFCTVCGDPSSRMSIKHGESTTSP 480
            TP LL+LQ+  +K+  +  G          GE+ TSP
Sbjct: 984  TPLLLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSP 1020


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 537 HCAENLLECILQTEEFRREDIAEAIRTGFLDLDKK 641
           H  E L++CIL+ EE+ +      I   FLD+ K+
Sbjct: 74  HSEEKLVDCILKDEEYDKR--YPGIHIVFLDMVKE 106


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 350 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAH-HAQL--TLNGTLSDWSY 493
           PE + YN +GE     YG AS   +    +  H  +Q    ++ ++ DW Y
Sbjct: 230 PEIQDYNFAGENGMGVYGAASAYTYSDAYQALHTRSQYLREMSNSIEDWDY 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,870
Number of Sequences: 5004
Number of extensions: 48659
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)