Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0123
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)                 33   0.23 
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              30   2.1  
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)                 28   6.5  
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.6  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = +3

Query: 486 GRTF-AVFDGHAGARVSAHCAENLLECILQTEEFRRED---IAEAIRTGFLDLDKKMSEL 653
           G+ F AVFDGH G   +      L E I +   F   D   + +AI+ GF+   + M ++
Sbjct: 52  GQAFIAVFDGHGGREAAVFARSRLWETIKKQRGFYSSDPEHVVKAIKEGFMATHRSMWKV 111

Query: 654 --PELSNGKREV 683
             PE+  G   +
Sbjct: 112 LGPEMIPGPETI 123


>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
          Length = 1338

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENL-LECILQ--TEEFRREDIAEAIRTGFLDLDK 638
           + VFDGH GA V+   A+ L  E +LQ  T++   E++   +R  F  ++K
Sbjct: 112 YGVFDGHDGASVADFAAQRLPAELLLQQLTDDMTDEEVQLVLRQAFFAVEK 162


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECI 566
           +AVFDGHAG R S   AE+L E I
Sbjct: 456 YAVFDGHAGPRASLFAAEHLHENI 479


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLD 635
           FAVFDGH G   +   A + L C L   E   +D   A+   F + D
Sbjct: 79  FAVFDGHGGIDAATFAATH-LHCFLAQNEHLIKDPGLALHETFQNTD 124


>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMS-ELPELSNG 671
           FAVFDGH G   +    + L E + +       D+ + +   F + D ++   L  L + 
Sbjct: 119 FAVFDGHGGVSSAEFAHDKLHEIVRRMHRDGENDLEKILVQAFEECDTELKRHLEHLVSE 178

Query: 672 KRE 680
           K E
Sbjct: 179 KGE 181


>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
          Length = 503

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 574 VCRIHSRRFSAQCAETRAPACPSNTAKVRPVRECTVQSE 458
           +CR   RRF+   AE   P C + T +  P ++  +  E
Sbjct: 352 LCRYCQRRFNPTVAERHIPKCANTTNRPAPPKQRAIPLE 390



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 574 VCRIHSRRFSAQCAETRAPACPSNTAKVRPVRECTVQSE 458
           +CR   RRF+   AE   P C + T +  P ++  +  E
Sbjct: 440 LCRYCQRRFNPTVAERHIPKCANTTNRPAPPKQRAIPLE 478


>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 365

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 540 SVRRPELPHVHQTRRKYDQSESVPFRVSCA*CASSISTRH 421
           S+RRP L HV   R+K            C  C    ST H
Sbjct: 170 SLRRPSLDHVSPDRKKLKLESESQDTFDCMSCKKVFSTPH 209


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 696 GRRTRLLFYRWTAREARSFFYLNP 625
           GRR R  + RW   E  S F +NP
Sbjct: 415 GRRNRTTYKRWQIEELESAFSINP 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,693,745
Number of Sequences: 59808
Number of extensions: 371567
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)