Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0123
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical pr...    77   1e-14
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    64   9e-11
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical...    40   0.002
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    38   0.005
Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical ...    33   0.20 
U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.        31   1.1  
U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of...    31   1.1  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    29   4.4  

>Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical
           protein F25D1.1a protein.
          Length = 468

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 33/59 (55%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
 Frame = +2

Query: 326 SMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQ--LTLNGTLSDWSYF 496
           +MGAFL+KP+T K N  GEGNG+RYG++SMQGWR+ MED+H A+  ++ +    DWS+F
Sbjct: 83  TMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFF 141



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFR 587
           FAVFDGHAG  ++   +  LLE ++ +EEFR
Sbjct: 141 FAVFDGHAGHHIANRASSQLLEHLISSEEFR 171


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = +2

Query: 329 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWSYF 496
           MGA+LNKP  +K  E G GNGL Y   +MQGWRV  EDAH+  + L+   +DW  F
Sbjct: 1   MGAYLNKPIIEKEKEEGSGNGLSYACTTMQGWRVNQEDAHNCVVDLH---TDWHMF 53



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLD 635
           F V+DGH G  VS   +  L + + + + +  +D+AE ++  F+D D
Sbjct: 53  FGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAFVDFD 99


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/50 (44%), Positives = 35/50 (70%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKM 644
           FAV+DGH G++VS +   NL + ++  +EF   ++ EAI  GFL+LD++M
Sbjct: 55  FAVYDGHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQM 104



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 329 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL 466
           MG  L++P TKK + S        G + MQGWRV+MEDAH   L+L
Sbjct: 1   MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAHTHLLSL 46


>Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical
           protein F25D1.1b protein.
          Length = 367

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
 Frame = +2

Query: 398 YGVASMQGWRVEMEDAHHAQ--LTLNGTLSDWSYF 496
           YG++SMQGWR+ MED+H A+  ++ +    DWS+F
Sbjct: 6   YGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFF 40



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFR 587
           FAVFDGHAG  ++   +  LLE ++ +EEFR
Sbjct: 40  FAVFDGHAGHHIANRASSQLLEHLISSEEFR 70


>AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.1 protein.
          Length = 766

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 501 VFDGHAGARVSAHCAENLLECILQTEEFRR---EDIAEAIRTGFLDLDKKM 644
           VFDGH G   S +   +LL  I + ++F     EDI EAIR GFL   ++M
Sbjct: 56  VFDGHGGEHASEYVRRHLLMNITKNQKFESNSDEDILEAIRQGFLMTHEQM 106


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLD 635
           F V+DGH G  VS   +  L + + + + +  +D+AE ++  F+D D
Sbjct: 31  FGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAFVDFD 77


>Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHC----AENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSE-LPE 659
           FA+FDGHAG R + HC     + + E + +  +F    + ++++  F +  K + +    
Sbjct: 71  FAIFDGHAGPRAAEHCQSQMGKTVKEKLAKFSDF--PTLTKSLKQTFTESYKAVDDGFLA 128

Query: 660 LSNGKREVWFDG 695
           ++   + +W DG
Sbjct: 129 IAKQNKPIWKDG 140


>AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHC----AENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSE-LPE 659
           FA+FDGHAG R + HC     + + E + +  +F    + ++++  F +  K + +    
Sbjct: 71  FAIFDGHAGPRAAEHCQSQMGKTVKEKLAKFSDF--PTLTKSLKQTFTESYKAVDDGFLA 128

Query: 660 LSNGKREVWFDG 695
           ++   + +W DG
Sbjct: 129 IAKQNKPIWKDG 140


>U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 498 AVFDGHAGARVSAHCAENLLECILQTEEFR--REDIAEAIRTGFLDLDKKMS 647
           AVFDGH G   S + A +L E  L+  + R   + + + +R     LD++M+
Sbjct: 199 AVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMT 250


>U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 2 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 498 AVFDGHAGARVSAHCAENLLECILQTEEFR--REDIAEAIRTGFLDLDKKMS 647
           AVFDGH G   S + A +L E  L+  + R   + + + +R     LD++M+
Sbjct: 199 AVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMT 250


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 495 FAVFDGHAGARVSAHCAENL 554
           F VFDGH G + S H + NL
Sbjct: 70  FGVFDGHGGQQCSRHISTNL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,442
Number of Sequences: 27780
Number of extensions: 275124
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)