Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0121
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.8  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   6.4  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   8.5  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 422 MALTLIMIYGAARGKPAYLLPFFCLQIFDFAITILTATGYL 544
           + L+L+ IY AA   P Y+      ++F+F++ ++ ++  L
Sbjct: 499 LTLSLMSIYVAAEENPLYVASSIFSKLFNFSLDLIKSSSKL 539


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 393 MWVRWLQWVPWLSH 434
           +WV  LQW  W+SH
Sbjct: 423 VWVNSLQWKTWISH 436


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 245 HGPVHPAIEDHAQSLLKLLV 186
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 203 AIVRDPRLLDELDRESSPVSSWSNVG 280
           A V D    DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -1

Query: 263 NSLGMTHGPVHPAIEDHAQSLLKLLVPLGAGKGAMIPE*LCQSEHVGRSSIATHCHV 93
           N+  +T+ P HP          K+LV         +    C + H+ R   A+HCH+
Sbjct: 146 NAYSLTYNPAHPWSVIPEDR--KVLVGSTRSDSVFVNTVYCHTCHLYRPPRASHCHL 200


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +2

Query: 239 DRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHD 388
           +R  SP   W+      + LP P +N      P    A+ P   S +Y D
Sbjct: 38  ERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRD 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,059
Number of Sequences: 5004
Number of extensions: 59820
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)