Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0121
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 32 0.54
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 30 1.7
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 30 2.2
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 29 3.8
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 29 5.1
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 28 6.7
02_01_0489 - 3522907-3523363,3523519-3523610,3525755-3526171,352... 28 8.8
>09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +2
Query: 122 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 298
CL +++ IILG +H L+++AL + PR+L +D + P+S VG+ DV+
Sbjct: 832 CLDMKS--IILGKYHYMLYILALAM------QPRMLLTVDEDLKPLSVPVCVGQAVDVVG 883
Query: 299 ----PTPLSNVETRPSP 337
P ++ +T +P
Sbjct: 884 QAGRPKTITGFQTHSTP 900
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 122 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 298
CL +++ ILG +H L+++ L + PR+L +D + P+S VG+ DV+
Sbjct: 792 CLDMKS--TILGKYHYILYIIVLAM------QPRMLLTVDEDLKPLSVPVRVGQAVDVVG 843
Query: 299 ----PTPLSNVETRPSP 337
P ++ +T +P
Sbjct: 844 QAGRPKTITGFQTHSTP 860
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 589 ATGLRNQGMDLTQVTQIASCRQNGDSKVEDL 497
+ GL N VTQI SC N D +VE+L
Sbjct: 95 SVGLSNSESRPDSVTQIQSCLNNADERVEEL 125
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 239 DRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYS-----QHASHPSDHSLIYHDADVGA 403
DR S + S S+ GRTG + PT + PSP Q HPS S+ H A GA
Sbjct: 2137 DRRPS-LGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSM--HSAGWGA 2193
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 227 LDELDRESSPVSSWSNV-GRTGDVLPTPLSNVETRP 331
+D L P+SS+S + G D LP+P SNV RP
Sbjct: 855 VDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRP 890
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 251 SPVSSWSNVGRTGDVLPTPLSNVETR-PSPYSQHASHPSDHSLIYHDADV 397
+PVSS+ GR + PTP +N + R P P S H YH+ ++
Sbjct: 505 TPVSSFQR-GRAVTMTPTPQNNPQRRPPPPPSPHVPVFKPEEPTYHEYEL 553
>02_01_0489 -
3522907-3523363,3523519-3523610,3525755-3526171,
3526488-3526565,3527021-3527292,3529346-3529541
Length = 503
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 272 NVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 400
N G +VLP S+ +PSP S +AS +D YH G
Sbjct: 236 NHGGYEEVLPCFSSSHHQQPSPASMNASAAADDDQDYHHLSEG 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,858,413
Number of Sequences: 37544
Number of extensions: 450229
Number of successful extensions: 1355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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