Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0121
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   0.64 
AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 92  ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 190
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 92  ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 190
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical
           protein 4R79.1b protein.
          Length = 180

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 565 MDLTQVTQIASCRQNGDSKVEDLKTEEGQQ-IGRFPTSGAVDHNQ-CESHGTHCNH 404
           +D+ ++ ++ SC+     KV+   TEE  Q I +     +VD  + C  H   C H
Sbjct: 90  LDIVKINKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKNSVDSGEKCVDHFADCPH 145


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 565 MDLTQVTQIASCRQNGDSKVEDLKTEEGQQ-IGRFPTSGAVDHNQ-CESHGTHCNH 404
           +D+ ++ ++ SC+     KV+   TEE  Q I +     +VD  + C  H   C H
Sbjct: 254 LDIVKINKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKNSVDSGEKCVDHFADCPH 309


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 613 QQLLAEGNATGLRNQGMDLTQVTQIASCRQNGDSKVEDLKTEEGQQIG 470
           Q+L AE NA         L++ ++++   +  + KVE LK EEG  +G
Sbjct: 135 QKLEAEVNALRKEVLESKLSEQSELSKVNETLNMKVESLKIEEGVSVG 182


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 370
           R+ D LPT L NV TRP+     +  P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 269 SNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMIY 448
           SN+ R    L   +S   T  SP S +++ PSD    Y D  +   V +G  AL L++ +
Sbjct: 70  SNMPRPTQGLSEIMSTTTTTGSPLSIYSTTPSDAPETYSDTVLS--VVLGFYALLLLIAF 127

Query: 449 GA 454
            +
Sbjct: 128 AS 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,870,077
Number of Sequences: 27780
Number of extensions: 348392
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)