Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0120
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    27   1.4  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   5.7  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    25   5.7  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   7.5  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   10.0 
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   10.0 
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   10.0 

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 TGKILGIVQKVGLDETII*TPKKWGVVDLVLSAYHK 182
           TGK LGIV   G ++ +I  P   G+VD+V+    K
Sbjct: 82  TGKSLGIVVVSGRNKGLIKNPFLGGLVDIVMRRQDK 117


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 334 TEIDSQDTWTGVWHT 378
           +  D +D W GVW+T
Sbjct: 72  SNFDEEDNWNGVWNT 86


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 212 DPPLFWGLNNRLVEPYLLDYTQDFSGGKQ 298
           DP + +G    ++E    +  QDF GGKQ
Sbjct: 296 DPNILYG-TREIIEARTKEMIQDFGGGKQ 323


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 328 VVFRNSGLHWLFSTGKILGIVQK 260
           VVF N+ LHW+    K   IV K
Sbjct: 99  VVFSNAALHWIMRQPKNRPIVMK 121


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 492 HQRFSKFCRPLKLHCVV 442
           H  F+K  RPL LHC +
Sbjct: 129 HNLFTKDARPLTLHCTL 145


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 75  VSKYASQ*EEHNRENRLEISESERKLWFKN*IFCMF 182
           VSKY S  +E NR + L++ +   K WF     C++
Sbjct: 108 VSKY-SHLQEKNRTSFLQVFKERSKRWFLFPRLCIY 142


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 218 PLFWGLNNRLVEPYLLDYTQDF 283
           PLF G+ + L+E +L   T+DF
Sbjct: 440 PLFAGMESFLIEVFLQPVTRDF 461


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 182 KHTKNLVFEPQLSLTFTYFQAV--FTVVFLSLRRVF*YYTLVSSREK 48
           KH+KNLV E  L L+  Y   V   T+   SL+ +F  + + S   K
Sbjct: 356 KHSKNLVSERMLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMVK 402


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 308 SGISENHVLPRSTPRTPGQAC 370
           SGI+EN VLP  +   PG  C
Sbjct: 203 SGINENAVLPILSSSCPGWIC 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,221
Number of Sequences: 5004
Number of extensions: 50094
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)