Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0120
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   3.4  
SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)              28   4.5  
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             28   4.5  
SB_8992| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)               28   4.5  
SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)                       28   4.5  
SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 377  VCHTPVQVSWESISVARGFQKFRITLAVFHRKNPGY 270
            +  T V + W  ++++  FQ +R+  ++ HR N  Y
Sbjct: 1257 ISKTSVTLDWIPLNISSKFQGYRVYYSLLHRGNVSY 1292


>SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
          Length = 207

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 75  VSKYASQ*EEHNRENRLEISESERKLWFKN 164
           V KY ++ + H   + L +S+++ K+WF+N
Sbjct: 152 VQKYLTKADRHQLASMLGLSDNQVKVWFQN 181


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 302 LAVFHRKNPGYSPEGRARRD 243
           +A  H+KNPGY P+   R D
Sbjct: 456 VAFHHKKNPGYGPDNTPRPD 475


>SB_8992| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
          Length = 156

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 75  VSKYASQ*EEHNRENRLEISESERKLWFKN 164
           V KY ++ + H   + L +S+++ K+WF+N
Sbjct: 101 VQKYLTKADRHQLASMLGLSDNQVKVWFQN 130


>SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)
          Length = 602

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 338 SVARGFQKFRITLAVFHRKNPGYSPEGRARRDDYL 234
           S++  F+K R  L++ H+  P   P+ R+  DD++
Sbjct: 361 SISINFEKIRADLSMLHQTLPQLDPDLRSVNDDWI 395


>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 237 IIVSSSPTFWTIPRIFPVENSQCNPEFLKTTCY 335
           I+  +  T  +I  IF   N Q NP F++  CY
Sbjct: 333 IVRHTDRTLTSIKSIFKQSNVQANPIFMRVWCY 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,082,354
Number of Sequences: 59808
Number of extensions: 397152
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)