Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0119
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   1.7  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   1.7  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    27   3.0  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   3.0  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.0  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.3  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 117 AWPRSRLWFGWRGTFFILITG 55
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 627 LHSHAIEQVVVDNENFVTSFAKSPPNLCIADCSTFTSRNINISSC 493
           LH+ + EQ++ D+EN V +  K P +    +      R  N S C
Sbjct: 25  LHTSSTEQIIKDSENVVHTTLKLPTSTLSREFWMKDERTNNCSLC 69


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -2

Query: 585 NFVTSFAKSPPNLCIADCSTFTSRNINISSCRAIKTSHFHIRIVL-----SVISF 436
           N+V S +K+P NL     ++ T   +N+  C  I    +H++ ++     SV+SF
Sbjct: 612 NYVLSSSKNPMNLLFTLHNSITDGKLNV-HCNDIIPGRYHLKTIVFKLKDSVLSF 665


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 544 AQVRWALSKRGNKILIVNNYL-FYCMRVQ 627
           + + W L  R NK ++VNN++   C R Q
Sbjct: 210 SHIEWNLHLRSNKSIVVNNFVGQLCSRTQ 238


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 439 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 284
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 463 NMEMTGFDGSATGDVNISGGEGGAVGDAQVRWALSKRGNKILIV--NNY 603
           N  + G   +ATG+VN +   G  +   ++ W   K G   L+V  +NY
Sbjct: 621 NNTLIGAMNAATGEVNRAYDNGKGMTIPELMWKWKKDGQPWLVVAEHNY 669


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 406
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +1

Query: 445 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRWALSKRGNKILIVN 597
           +   + N  +  F      +VN+ GG GG+V D     +  K  ++   +N
Sbjct: 134 FRSSNQNSSLKSFQSVPDSNVNVFGGFGGSVVDNNELLSTGKNSHQTTSLN 184


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 409 HPTYSH*QTLVPFWERQH 356
           HP Y + ++  PFWE  H
Sbjct: 197 HPAYENDRSWRPFWENYH 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,641
Number of Sequences: 5004
Number of extensions: 39769
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)