Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0119
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 32 0.34
11_04_0273 + 15643469-15643654,15644882-15644914,15645688-15645735 31 1.0
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493... 29 3.1
02_04_0509 - 23554609-23555241,23555371-23556318 29 3.1
12_02_0744 - 22704637-22705341 28 5.5
03_05_1157 + 30816143-30816359,30817005-30817120 28 5.5
11_01_0475 - 3669734-3671452 28 7.2
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 28 7.2
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 28 7.2
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 28 7.2
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 27 9.6
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 9.6
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 448 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRWALSKRGN 579
G D + + +G A G + GG G VGDA L RGN
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDATRAAVLGGRGN 170
>11_04_0273 + 15643469-15643654,15644882-15644914,15645688-15645735
Length = 88
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 514 SGGEGGAVGDAQVRWALSKRG 576
SGGEGG VGD ++W RG
Sbjct: 54 SGGEGGEVGDGNMKWIGHDRG 74
>04_03_0520 -
16748646-16748741,16748821-16748895,16749260-16749362,
16749635-16749783,16750986-16751110,16751320-16751389
Length = 205
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 338 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 436
Q K+ + LP + SL + G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 460 SNMEMTGFDGSATGDVNISGGEGGAVGDAQVRWALSKR 573
S+ TG DG A VN+S AV DA +R + R
Sbjct: 169 SSSSPTGHDGGAAPAVNVSAPIAAAVADATMRAVIGDR 206
>12_02_0744 - 22704637-22705341
Length = 234
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 451 EDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVR 555
EDD + + G ATG + GG GG GD+ VR
Sbjct: 47 EDDDDRDADGAAAFATGAADGGGGGGGG-GDSHVR 80
>03_05_1157 + 30816143-30816359,30817005-30817120
Length = 110
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 414 IVIPHTLINKLWFHFGSDSIVLIFVW 337
++IPH +NK FH S +++LIF+W
Sbjct: 85 LIIPHDTLNKGKFHKRS-NLLLIFLW 109
>11_01_0475 - 3669734-3671452
Length = 572
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 293 SSGSTHFRFAGPLCEEEELFDAID 222
SSG+ HFR +G + +E+F A++
Sbjct: 486 SSGAKHFRVSGSVASPDEIFAALE 509
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 484 DGSATGDVNISGGEGGAVGDAQVRWALSK 570
DG+ATGD+ + GE + A+ RW+ K
Sbjct: 513 DGTATGDLFLDDGESPEMVGARSRWSQIK 541
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 426 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 334
R + +P TL+++LW HF + +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 561 SPPNLCIADCSTFTSRNINISSCRAI-KTSHFHIRIVLSVISFVIVRAIFI 412
+PP + D S F + + + A KT FH+ ++F I+ A+F+
Sbjct: 17 APPGRKVLDFSIFNLKELVVGENYANPKTCFFHVLFKAGALAFYILSALFV 67
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 498 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFH 373
SC+ + TS + I + +V+ +V++ +FI + NK H
Sbjct: 471 SCQDVSTSIYVITLAGAVLIYVVIHIVFITLEDEDKNKTSVH 512
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 245 LPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCGMTMKMA 424
LP K+D + + W V+++ L + R+ LS KW+ V ++
Sbjct: 103 LPTKIDDLSHSTGHGWTTREKVIKRLLLMVLEPVKRSDLSRLKWSSYDYCLVLDQRCSVS 162
Query: 425 RTMTKLITERTILIWK*LVLMA-LQLEMLIFLEVKVEQ 535
T + L T W +A LQL +L+ +E ++ Q
Sbjct: 163 PTTSTLSGRVTTTAWSSTSDIAFLQLPLLLVVEFRLHQ 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.128 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,251
Number of Sequences: 37544
Number of extensions: 281750
Number of successful extensions: 863
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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