Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0119
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical pr... 33 0.17
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 32 0.30
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 30 1.2
U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical p... 29 2.8
AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear recep... 29 2.8
AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear recep... 29 2.8
U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine rece... 29 3.7
>Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = -2
Query: 507 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRH 328
+ +C ++ T++ + + L VI VI R + VI ++ + H S SI L +W+
Sbjct: 273 DFDTCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFAL 332
Query: 327 KFVFCRTRGTCFQWIYAFSFRWST 256
K + + + W+T
Sbjct: 333 KLAHPSAQPVAAWVFFTSNLAWTT 356
>Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = -2
Query: 507 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRH 328
+ +C ++ T++ + + L VI VI R + VI ++ + H S SI L +W+
Sbjct: 273 DFDTCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFAL 332
Query: 327 KFVFCRTRGTCFQWIYAFSFRWST 256
K + + + W+T
Sbjct: 333 KLAHPSAQPVAAWVFFTSNLAWTT 356
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -2
Query: 639 IRVLLHSHAIEQVVVDNENFVTSFAKSPPNLCIADCSTFTSRNINISSCRAIKTSHFH 466
+RV +H + D N +S + PNL I+ S S+N N++S R TS FH
Sbjct: 26 VRVTTQTHTAIPGMPDLGNIHSSMLSNFPNLAISSPSVVGSQNGNLTSIRVTNTS-FH 82
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -2
Query: 483 KTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTR 304
KT +HI++ + + +++A+F+V+P T I L +F S I Y + + +
Sbjct: 627 KTVKYHIQVTVLFLCSCVIQALFVVLPVTHI-VLCVYFDSFKIYTKDYIY-YSLLTQAHQ 684
Query: 303 GTCFQWIYAFS 271
GT F Y S
Sbjct: 685 GTAFTLFYVLS 695
>U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical
protein F01G12.1 protein.
Length = 178
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 402 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 277
HT+ K+WFH+G D +VL W K G F WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157
>Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical
protein K06B4.11 protein.
Length = 364
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 585 NFVTSFAKSPPNLCIADCSTFTSRNINISSCRA 487
NF +S ++ PP+ C+ C + ++CRA
Sbjct: 10 NFESSSSQGPPSYCLICCEVADGHHFGAAACRA 42
>AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 365
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 585 NFVTSFAKSPPNLCIADCSTFTSRNINISSCRA 487
NF +S ++ PP+ C+ C + ++CRA
Sbjct: 11 NFESSSSQGPPSYCLICCEVADGHHFGAAACRA 43
>AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 366
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 585 NFVTSFAKSPPNLCIADCSTFTSRNINISSCRA 487
NF +S ++ PP+ C+ C + ++CRA
Sbjct: 12 NFESSSSQGPPSYCLICCEVADGHHFGAAACRA 44
>U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine
receptor, class v protein31 protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 142 IVFVVTTWGLASKSALVWMAWNFLHF 65
++F TTWGL +K + M + + HF
Sbjct: 59 MIFYTTTWGLRTKPGIREMLYTYQHF 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.309 0.128 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,661
Number of Sequences: 27780
Number of extensions: 229689
Number of successful extensions: 556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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