Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0118
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 32 0.064
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 27 1.8
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 4.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 5.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 5.5
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 7.3
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 7.3
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 9.7
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 25 9.7
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 32.3 bits (70), Expect = 0.064
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 391 ESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSK 558
++N+L R L +T P ++ + C R C DD+ + WN +W SK
Sbjct: 511 KTNDLVRSLDENLKTKSGPEKLYLIMARYCLR----CVYDDKMDSLWNSRSFWVSK 562
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 307 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 474
RH D +N+ L + G+G+P I + I+ E NL +++ + S+ S+ P+
Sbjct: 99 RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156
Query: 475 LCSRTYRECTEDD 513
+ S T++D
Sbjct: 157 IKSDENLSFTDED 169
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 68 EYIITADLQTCLTEALQCSYSFIVRPLFTHV 160
E+I +L T L E L+C Y I F HV
Sbjct: 395 EFISNTNLPTILPEILECFYDNITYTPFVHV 425
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 565 ERLDWDKRVGVVLGVVCRSSITGSSKEVAW 654
++LD+ + VGV+LG R++ + + EVA+
Sbjct: 832 QQLDFTRTVGVLLGTSIRTNASDCTLEVAY 861
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 226 PQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGR 390
P ++RI A SP ++ + + + +L+ EEL GL + I +GR
Sbjct: 2039 PSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGR 2098
Query: 391 ESNNLARILQTYYETSH 441
++LAR+L ++ H
Sbjct: 2099 TVHSLARLLAFWHVELH 2115
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 100 SHRSTSMQLFIYSSPIIHPRFRRQST 177
S S SMQ+ Y +HPR RRQS+
Sbjct: 234 SSHSASMQM--YEMDDLHPRLRRQSS 257
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 475 LCSRTYRECTEDDEEEKAWNEPW 543
LC + +C ++D+EE W E W
Sbjct: 86 LCQEKFEKCLKEDDEE--WIELW 106
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 235 WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 369
WT K +++VDS + + +E +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 235 WTSRIVAKLSPYI 273
W SR++A+L PYI
Sbjct: 116 WVSRVIARLLPYI 128
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 235 WTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARI 414
W S I + ++ Y+ + +A + + + + Y I++ +H E NNL+ I
Sbjct: 38 WNSDIRSWMTSYVGFNGETAAISEEQLIWAEKIPDYNE-----EIVVRLHLEEENNLSDI 92
Query: 415 LQ 420
LQ
Sbjct: 93 LQ 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,325
Number of Sequences: 5004
Number of extensions: 63006
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -