Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0118
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              28   7.7  
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   7.7  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +1

Query: 322 LNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYREC 501
           L +E++Y   LG+P++M+ +      NLA  +      SH   L W  VPM CS    + 
Sbjct: 118 LMQEVNYAIHLGLPSVMLELGNYNIINLAHYVNDILINSHVQQL-WIKVPMRCSEDMCDK 176

Query: 502 TEDDEEEKAWNEPWY 546
           +  DEE+    + +Y
Sbjct: 177 SLFDEEDSMGVQFYY 191


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 464 VYLCYVVEHIENALKMMKKRKLGMSPGTGGP-NSMSALIGINVLVLFWELSADL 622
           V LCY++ ++ N + ++KK K     GTG P    S    ++ LV F  +++++
Sbjct: 414 VSLCYILSNLGNVVSLIKKGKTNCRAGTGIPLQRKSQTSSVSPLVQFEGVTSEM 467


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +1

Query: 319  YLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRE 498
            +LN    +C   G PA+++S + +   + A+ L   Y+    P +          RTY  
Sbjct: 826  FLNCLRRFCARRGTPALIVSDNAKTFKSAAKFLNELYD---QPDI----------RTY-- 870

Query: 499  CTEDDEEEKAWNEPWYWWSKFHERL 573
            C E+  + K   E   WW  F ER+
Sbjct: 871  CEENRIQWKFNRERAPWWGGFFERI 895


>SB_36080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 113 LQCSYSFIVRPLFTHVFVG 169
           ++C    ++RP FTH+F+G
Sbjct: 32  IECESPMVIRPFFTHLFLG 50


>SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 44  QQEISCGYEYIITADLQTCLTEALQCSYSFIVRP 145
           QQ+I+ GYE +  A L +C T+ +Q +   ++ P
Sbjct: 8   QQQITTGYESVAFAILSSCRTQFMQITDRILLYP 41


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 529 WNEPWYWWSKFHERLDWDKRV 591
           WN+PWY W K  +  D DK V
Sbjct: 26  WNKPWYQWDK--KENDADKTV 44


>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1238

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 544 YWWSKFHERLDWDK-RVGVVLGVVC 615
           YWW     R+  D+ R GV LGV C
Sbjct: 701 YWWLSMMSRMTRDQQRSGVTLGVYC 725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,854,309
Number of Sequences: 59808
Number of extensions: 478439
Number of successful extensions: 1137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)