Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0118
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    50   1e-06
U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase...    31   0.55 
AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinas...    31   0.55 
Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 39/144 (27%), Positives = 64/144 (44%)
 Frame = +1

Query: 211 DMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGR 390
           D+ L    W S +V K+SP+I+ DS         E++L +ELSY   LG+  + I +   
Sbjct: 111 DVQLRNDLWESYVVGKISPWIDCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRI 170

Query: 391 ESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSKFHER 570
            S   A IL+ +  T +    +W  +P        +C + D       + W  W+     
Sbjct: 171 SSPRTAAILKKWIWTRNSRFTVWVQLP----SAIEKCKDYDAFTIEHVDLWTIWA----- 221

Query: 571 LDWDKRVGVVLGVVCRSSITGSSK 642
            D+ K  G   GV  + ++T SS+
Sbjct: 222 -DFRKNCGNFSGVYFQVALTISSE 244


>U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase c
           protein 3 protein.
          Length = 597

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 77  ITADLQTCLTEALQCSYSFIVRPLFTHVFVGNPQMP 184
           I+ D Q  L EA++C  S     L  HVFVG P++P
Sbjct: 65  ISIDSQMELDEAVRCLNSSQEAELNIHVFVGKPELP 100


>AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinase
           C3 protein.
          Length = 597

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 77  ITADLQTCLTEALQCSYSFIVRPLFTHVFVGNPQMP 184
           I+ D Q  L EA++C  S     L  HVFVG P++P
Sbjct: 65  ISIDSQMELDEAVRCLNSSQEAELNIHVFVGKPELP 100


>Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical
           protein C25G4.4 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 654 PSHLFTTSCDGRSADNSQNNTNTFIPIK 571
           PSH  + SCDG  A+ S ++ +T  P +
Sbjct: 13  PSHPISGSCDGFQAEGSDHHHSTMTPFQ 40


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 388 RESNNLARILQTYYETSHHPSLI 456
           R +NNL +  Q ++++ HHPSLI
Sbjct: 844 RPNNNLNQQQQHHHQSHHHPSLI 866


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 388 RESNNLARILQTYYETSHHPSLI 456
           R +NNL +  Q ++++ HHPSLI
Sbjct: 910 RPNNNLNQQQQHHHQSHHHPSLI 932


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,249,795
Number of Sequences: 27780
Number of extensions: 354915
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)