Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0118
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 610 QLPKQHQHVYPNQGAH 563
           Q+  QH H+ P QG H
Sbjct: 171 QMHTQHPHMQPQQGQH 186


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 461 HVYLCYVVEHIENALKMMKKRKLGMSPGTGGPNSMSALIGINVLVLFW 604
           H +  Y    I     M +KRK     G    + + A+IG   L LFW
Sbjct: 177 HTFGAYFGLAISFVFGMKEKRKEHHLEGPSYNSDIFAMIGTIFLWLFW 224


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 101 LTEALQCSYSFIVRPLFTHVFVGNPQMPVKMVVLRGQIW 217
           L   L C Y   VRP+ +H    N  M +   ++    W
Sbjct: 47  LKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDW 85


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 134 IVRPLFTHVFVGNPQMPVKMV 196
           ++R L  HVF+G   M V  V
Sbjct: 805 VLRELQNHVFIGRKNMRVLYV 825


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,806
Number of Sequences: 438
Number of extensions: 4535
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)