Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0118
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c... 65 5e-11
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c... 65 5e-11
At3g24060.1 68416.m03021 self-incompatibility protein-related lo... 35 0.055
At4g21770.1 68417.m03150 pseudouridine synthase family protein c... 30 1.6
At5g57970.1 68418.m07253 methyladenine glycosylase family protei... 29 2.1
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge... 28 4.8
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge... 28 4.8
At1g01880.1 68414.m00106 DNA repair protein, putative similar to... 28 6.3
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.4
At2g26440.1 68415.m03172 pectinesterase family protein contains ... 27 8.4
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 27 8.4
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit... 27 8.4
>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
contains Pfam profile: PF05185 Skb1 methyltransferase
Length = 584
Score = 64.9 bits (151), Expect = 5e-11
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Frame = +1
Query: 208 SDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMI-SIH 384
SD+VLSP W+S +V K+S +I++DS +R E L +E+++ L + A ++ +
Sbjct: 72 SDLVLSPSQWSSHVVGKISSWIDLDSEDEVLRMDSETTLKQEIAWATHLSLQACLLPTPK 131
Query: 385 GRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSKFH 564
G+ N AR + + L W VP++ S E D+ + N+ W W+ F
Sbjct: 132 GKSCANYARCVNQILQGLTTLQL-WLRVPLVKS----EGDSMDDTSEGLNDSWELWNSFR 186
Query: 565 ERLDWDKRVGVVLGVV 612
+ D ++ V L V+
Sbjct: 187 LLCEHDSKLSVALDVL 202
>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
contains Pfam profile: PF05185 Skb1 methyltransferase
Length = 642
Score = 64.9 bits (151), Expect = 5e-11
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Frame = +1
Query: 208 SDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMI-SIH 384
SD+VLSP W+S +V K+S +I++DS +R E L +E+++ L + A ++ +
Sbjct: 72 SDLVLSPSQWSSHVVGKISSWIDLDSEDEVLRMDSETTLKQEIAWATHLSLQACLLPTPK 131
Query: 385 GRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSKFH 564
G+ N AR + + L W VP++ S E D+ + N+ W W+ F
Sbjct: 132 GKSCANYARCVNQILQGLTTLQL-WLRVPLVKS----EGDSMDDTSEGLNDSWELWNSFR 186
Query: 565 ERLDWDKRVGVVLGVV 612
+ D ++ V L V+
Sbjct: 187 LLCEHDSKLSVALDVL 202
>At3g24060.1 68416.m03021 self-incompatibility protein-related low
similarity to S3 self-incompatibility protein [Papaver
rhoeas] GI:1107841
Length = 147
Score = 34.7 bits (76), Expect = 0.055
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 409 RILQTYYETSHHPSLIWACVPM--LCSRTYRECTEDDEEEKAWNEPWYWWSKFHERLDWD 582
R++ ++ + S P +IW P L R +E DD E A + W W +++ + WD
Sbjct: 41 RVINSFRDNSSLPLVIWCTSPQGDLGGRALQE--GDDFEWTAKIDLWSWMAEYTCTMKWD 98
Query: 583 -KRVGVVLGVVCR-SSITGSSKEVAW 654
KR V R S+ GS+K+ +W
Sbjct: 99 SKRKQFEAFKVSRDSNRCGSTKKCSW 124
>At4g21770.1 68417.m03150 pseudouridine synthase family protein
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 472
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 232 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELS--YCRGLGVPAIMISIH 384
DW SRIVA Y+ +D P+ T D + E + R L +P + + H
Sbjct: 206 DWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTH 258
>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 347
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 289 SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTY 426
+A++ +RHE LN LS A M S H R S R++++Y
Sbjct: 78 AASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST--GRLIRSY 121
>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2 from
Homo sapiens [SP|O15488]
Length = 389
Score = 28.3 bits (60), Expect = 4.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 529 WNEPWYWWS 555
W +PWYWWS
Sbjct: 183 WLKPWYWWS 191
>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2 from
Homo sapiens [SP|O15488]
Length = 497
Score = 28.3 bits (60), Expect = 4.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 529 WNEPWYWWS 555
W +PWYWWS
Sbjct: 291 WLKPWYWWS 299
>At1g01880.1 68414.m00106 DNA repair protein, putative similar to
Swiss-Prot:P28706 DNA repair protein rad13
[Schizosaccharomyces pombe]; similar to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472
Length = 570
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 473 CYVVEHIENALKMMKKRKLGMSPGTGGPNSMSALIGINV 589
CY + HIE+ L + +K + +S G ++GI V
Sbjct: 186 CYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGV 224
>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 490
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 SLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYW----WSKFHERLDWDKRVG 594
S+++ C+ LC+ + E +A N+P+ W W K+ + +W ++ G
Sbjct: 283 SVLYVCLGSLCNLPLAQLKELGLGLEASNKPFIWVIREWGKYGDLANWMQQSG 335
>At2g26440.1 68415.m03172 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 547
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 485 EHIENALKMMKKRKLGMSPGTGGPNSMSALIGI 583
+HI N+L + K++ +P TGG L+G+
Sbjct: 177 KHISNSLSALPKQRRTTNPKTGGNTKNRRLLGL 209
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 29 IKKMAQQEISCGYEYIITADLQ--TCLTEALQCSYSFIVRPLFTHVFVGN 172
+K ++ S G E I D + C A C+YS + + L++H +V +
Sbjct: 105 VKHGCTEKFSYGKELIHEKDCRFALCYCPAPNCNYSGVYKDLYSHFYVNH 154
>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
Length = 183
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 496 ECTEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVL 603
E +E+DE+E+A W +KF E+LD + ++L
Sbjct: 90 EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIIL 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,176,036
Number of Sequences: 28952
Number of extensions: 327457
Number of successful extensions: 903
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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