Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0117
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...   118   3e-29
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   1.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   2.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score =  118 bits (284), Expect = 3e-29
 Identities = 56/92 (60%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
 Frame = +1

Query: 40  MIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGDTLKRGTHLTL 216
           MIGQFGVGFYSA+LVAD VTV SK+NDD Q+VW+S A  SF+V +D RG+ L RGT + L
Sbjct: 123 MIGQFGVGFYSAYLVADKVTVVSKNNDDEQYVWESSAGGSFTVTQD-RGEPLGRGTKIVL 181

Query: 217 HMKEEASDYLQADTIRALVKKYSQFINFPIYL 312
           HMKE+ +++L+   I+ +VKK+SQFI +PI L
Sbjct: 182 HMKEDQTEFLEEHKIKEIVKKHSQFIGYPIKL 213



 Score = 29.9 bits (64), Expect = 0.014
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 448 ELMNDNKPIWTRKPSEVQDDEY 513
           E +N  KPIWTR   ++  +EY
Sbjct: 277 EELNKTKPIWTRNADDISQEEY 298


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 91  SVTVASKHNDDRQ-HVWQSDANSFSV 165
           SV   SK+ DD + H WQ+D +  +V
Sbjct: 104 SVNENSKNGDDDEGHEWQADVSEEAV 129


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +1

Query: 49  QFGVGFYSAFLVADSVTVASKH-NDDRQHVWQSDANSFSVAED 174
           QFG+     +    + T+ S    DD    W  D  SFS+  D
Sbjct: 11  QFGLQLECNWSSGPNATLQSSACTDDLSSCWSEDMGSFSLPLD 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,922
Number of Sequences: 336
Number of extensions: 885
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)