Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0117
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   113   2e-26

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  113 bits (271), Expect = 2e-26
 Identities = 56/102 (54%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = +1

Query: 10  EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGD 186
           E +A+     MIGQFGVGFYSA+LVAD V V SKHNDD Q++W+S A  SF+V  D  G 
Sbjct: 107 EAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGP 166

Query: 187 TLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYL 312
            L RGT + L MKE+   YL+  TI+  VKK+S+FI++PI L
Sbjct: 167 RLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQL 208



 Score = 35.5 bits (78), Expect = 0.005
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 448 ELMNDNKPIWTRKPSEVQDDEY 513
           E +N  KPIWTR PSEV  +EY
Sbjct: 263 EELNKTKPIWTRNPSEVTKEEY 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,720
Number of Sequences: 5004
Number of extensions: 14413
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)