Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0117
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      130   7e-31
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      108   2e-24
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    79   2e-15
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_53327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  130 bits (314), Expect = 7e-31
 Identities = 55/80 (68%), Positives = 71/80 (88%)
 Frame = +1

Query: 82  VADSVTVASKHNDDRQHVWQSDANSFSVAEDPRGDTLKRGTHLTLHMKEEASDYLQADTI 261
           +AD V V SK+NDD+Q++W+SDA+SFS++EDPRG TLKRGT ++LH+KEEA DYL+ +TI
Sbjct: 175 IADRVIVTSKNNDDKQYIWESDASSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETI 234

Query: 262 RALVKKYSQFINFPIYLWAS 321
           + LVKKYSQFINFPI+LW S
Sbjct: 235 KDLVKKYSQFINFPIFLWTS 254



 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +1

Query: 436 VWDWELMNDNKPIWTRKPSEVQDDEYTQ 519
           VWDWE +N NKPIWTRKP E++DDEY +
Sbjct: 315 VWDWEQLNTNKPIWTRKPKEIKDDEYNE 342


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/92 (54%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
 Frame = +1

Query: 40  MIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGDTLKRGTHLTL 216
           MIGQFGVGFYSA+LVA+ V V +KHNDD Q++W+S A  SF+V  D  G+ L RGT + L
Sbjct: 66  MIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRD-SGEPLGRGTKIVL 124

Query: 217 HMKEEASDYLQADTIRALVKKYSQFINFPIYL 312
           ++KE+ ++YL+   I+ +VKK+SQFI +P+ L
Sbjct: 125 YLKEDQTEYLEEKRIKEIVKKHSQFIGYPLSL 156



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 442 DWELMNDNKPIWTRKPSEVQDDEY 513
           + E +N  KPIW R   E+  +EY
Sbjct: 217 EMEELNKTKPIWMRNADEITTEEY 240


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
 Frame = +1

Query: 10  EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASK--HNDDRQHVWQSDAN-SFSVAEDPR 180
           +  A     ++IGQFGVGFYS F+VAD V V +K    + + + W SD + S+  AE   
Sbjct: 165 KNEARSSHENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFWTSDGSGSYEYAE--- 221

Query: 181 GDTLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYL 312
            + + RGT L LH+KE+   +     +  +V++YS F+ FPIYL
Sbjct: 222 ANGVARGTKLVLHLKEDCKRFAMKTAVEDIVQRYSNFVGFPIYL 265


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDD 123
           E+   P +ND++ ++G    S   + D + + SKH DD
Sbjct: 80  EQDHQPVVNDLLSEYGHAAASCDDIDDGIMIISKHCDD 117


>SB_53327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 25  PEMNDMIGQFGVGFYSAFLVADSVTVASKHNDD 123
           P +ND++ ++G    S   + D + + SKH DD
Sbjct: 106 PVVNDLLSEYGHAAASCDDIDDGIMIISKHCDD 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,985
Number of Sequences: 59808
Number of extensions: 114519
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)