Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0116
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.79 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.8  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 568 DGLISIICQSVSADTLTCTIENGGML 645
           DG I  +C S+  DTL C    G +L
Sbjct: 218 DGSIVFVCFSLVEDTLPCVFFLGSIL 243


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 452 VSPFFSSTSAEPPPSKSP 399
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 452 VSPFFSSTSAEPPPSKSP 399
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 275 EPCEKFILATFIPVSIIFSSTATLRDAGPIVQII 174
           +P +  +  T++PV  I  S    +D  P++ +I
Sbjct: 468 QPYDSLLWHTWMPVMRICVSAWNPKDCDPLITLI 501


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 428 SAEPPPSKSPVLISGPLVS 372
           SA+P PS+SP  I  P+ +
Sbjct: 337 SAQPTPSQSPNQIYQPVTN 355


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 194 GPIVQIIPERRMYEDL 147
           G I+Q+    R YEDL
Sbjct: 612 GQIIQVANSLRQYEDL 627


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,600
Number of Sequences: 336
Number of extensions: 3414
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)