Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0116
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19) 94 1e-19
SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19) 41 9e-04
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43) 32 0.52
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_30062| Best HMM Match : Lipase_3 (HMM E-Value=1.7) 30 1.6
SB_32918| Best HMM Match : Oxidored_q2 (HMM E-Value=0.59) 29 4.9
SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5) 29 4.9
SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3) 28 6.4
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_18036| Best HMM Match : DUF29 (HMM E-Value=8) 28 6.4
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
Length = 211
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/104 (42%), Positives = 65/104 (62%)
Frame = +1
Query: 394 RTGLLEGGGSAEVELKKGETIKLTTSPDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDG 573
R G E++L+KG+ +K++T ++GN + I+VDY+NI VV+ G +++DDG
Sbjct: 76 RLNFSHGTHEGEIKLEKGQKLKVSTDKAMYDQGNTECIFVDYENIVKVVQIGGTVYVDDG 135
Query: 574 LISIICQSVSADTLTCTIENGGMLGSRKGVNLPGIPVDLPAVSE 705
LIS+ + L + N +LGS+KGVNLP VDLPAVSE
Sbjct: 136 LISLKVLEKGDNFLITEVLNDALLGSKKGVNLPNCAVDLPAVSE 179
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = +1
Query: 109 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHE 282
S L+ LDID IR SG++CTIGPASR+V ++ +++E GMN+AR+NFSHG+HE
Sbjct: 28 SNLEFRSELDIDKHPLTIRNSGVVCTIGPASRSVEIVAQLIENGMNIARLNFSHGTHE 85
>SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19)
Length = 145
Score = 41.1 bits (92), Expect = 9e-04
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +1
Query: 613 LTCTIENGGMLGSRKGVNLPGIPVDLPAVSE 705
L + N +LGS+KGVNLP VDLPAVSE
Sbjct: 9 LITEVLNDALLGSKKGVNLPNCAVDLPAVSE 39
>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 1176
Score = 31.9 bits (69), Expect = 0.52
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 20/198 (10%)
Frame = +1
Query: 79 VEKPT-VANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVAR 255
+EKP +A G + C + S+ + II I + L++ ++ GM +
Sbjct: 382 IEKPRFIALRGCAFHNRCN-SLSSEGTVSDGENIILRIPAGQYTIETLKRQIDGGMRLGE 440
Query: 256 MNFS--HGSHEYHAETIRN----C------REAEKSYSAKLGSPFSLAIALDTKGPEIRT 399
S S E H + N C RE E + K+ + AI +
Sbjct: 441 KPISIRDSSLEVHRNVVLNEPLACLLGLKTRELEANTRHKIKTIGHEAIFIHCDLVNASD 500
Query: 400 GLLEGGGS---AEVELKKGETIKLTTSPDYQEKGNADTIYVDYKNITNVVKPGNRIF--- 561
L +G S A VEL +G+ + P + G+ + Y+N+ K G +F
Sbjct: 501 SLQQGAPSQILASVELDEGKIYLNPSDPTHDVLGSLEQEVKHYENVRKKYKRGQSVFSKL 560
Query: 562 -IDDGLISIICQSVSADT 612
+ GLIS+I S T
Sbjct: 561 SVVLGLISVILGSSGLGT 578
>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 31.5 bits (68), Expect = 0.69
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Frame = +1
Query: 58 TMAFAGAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMET 237
T +E A GS+ + + L+ ++ R+ + C + R +++ +E
Sbjct: 274 TAGIRSELENTKKALKGSE-ERVSSLEKTVEARESRIRTLECRVDELERQKKKIKEELEC 332
Query: 238 ---GMNVARMNFSHGSHEY--HAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI--- 393
AR + S EY HA+ ++ E A L +ALDTK E+
Sbjct: 333 VSFNTQAARASKSQLLREYDEHAKEMKRLEEELNKAKASLKDKQDQLLALDTKYKELIAD 392
Query: 394 -------RTGLLEGGGSAEVELKKGETIKLTTSPDYQEKGNAD 501
GL E SA ELKK E + + + Q G+++
Sbjct: 393 NEGLKDQMRGLRETANSATQELKKKEQLLRALATERQSSGDSE 435
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +3
Query: 537 REARKPNLHRRWPHLYHLSVGQR*HSYVYH*KRRYARIPERRQPARHTRGPTRSLR 704
R R+P LH R P L+ R H+ R R+ RR+P HTR P R R
Sbjct: 157 RHTRRPRLHTRRPRLHRRRT--RLHTRRPRLHTRRPRL-HRRRPRLHTRRPRRHRR 209
>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +1
Query: 202 RNVAVLEKMMETG--MNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI-AL 372
RN A LE+ G + +AR NF E A+T + C E + ++++ + AL
Sbjct: 155 RNEAALEREQAVGDALAIARKNFERRRKEVIAQTRQQCEEEAATEASRVARLHQQEVGAL 214
Query: 373 DTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSPDYQEKGN 495
D + +++ L S KK + L DY+ N
Sbjct: 215 DQRIDDLKNML----ASERAAAKKLAGVHLALKEDYKRFQN 251
>SB_30062| Best HMM Match : Lipase_3 (HMM E-Value=1.7)
Length = 160
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -2
Query: 681 GYAGQVDAFPGSEHTSVFNGTRKSVSADRLTDDRDEAIVDEDSVSWLHDIRYVLVVHVNC 502
G QV A S ++N + S D + + I D V+W+ D LV +V C
Sbjct: 71 GCRNQVQAISLSSPGEIYNHGKFGYSLDDIQEYTTSVIAQHDLVTWI-DKHGGLVQYVEC 129
Query: 501 ISIAFL---LIIRTCCQL 457
+FL I +T C+L
Sbjct: 130 DDSSFLNCHSIRKTYCEL 147
>SB_32918| Best HMM Match : Oxidored_q2 (HMM E-Value=0.59)
Length = 136
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 228 DGDGNE-RGKDELLARFPRVPRRDHSQLSRGR 320
+G+GN + K+++LA + RVP + + RGR
Sbjct: 87 NGNGNNNKNKEDILADYRRVPENEEEKKRRGR 118
>SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)
Length = 317
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 425 AEPPPSKSPVLISGPLVSNAMAKEKGEP 342
A PPPS+SPV +G +S+A +K +P
Sbjct: 17 ALPPPSESPVWRTGNALSSAKKDKKRQP 44
>SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)
Length = 289
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 280 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 393
E HA+ + A+KSY L S +LA LD P++
Sbjct: 4 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 41
>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 280 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 393
E HA+ + A+KSY L S +LA LD P++
Sbjct: 287 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 324
>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
Length = 125
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 280 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 393
E HA+ + A+KSY L S +LA LD P++
Sbjct: 84 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 121
>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 280 EYHAETIRNCREAEKSYSAKLGS 348
E+H E IR +EA KSY K GS
Sbjct: 119 EHHEEAIRRHKEALKSYEKKDGS 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,333,549
Number of Sequences: 59808
Number of extensions: 485289
Number of successful extensions: 1644
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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