Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    31   0.13 
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    29   0.53 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   1.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   1.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   2.1  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   4.9  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    26   6.5  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   8.6  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   8.6  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    25   8.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
 Frame = +2

Query: 368  LCLVGPVRRGAGGDVVGLC---AAIEALGEASPEQISRTSTDRHFQNRGRIICITSARDD 538
            L ++GP+  G   +V GL    + IE   E S  +I+R  T   FQ+ GR++ +  A   
Sbjct: 1361 LYVLGPI--GETFEVNGLSHFPSDIEDTIERSHPRIARGGT-AVFQSAGRVVVVIEALGQ 1417

Query: 539  DSIRSLAEIALNTLIQQNKKASIVQPNSSR 628
            D + ++  + +N+++ +++  + V   +SR
Sbjct: 1418 DFLAAIVPVVINSILDEHQIIADVVAFTSR 1447


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 320 LIYALQNHSLQ--I*LICFQEINPTLYDSTLPQLPHCKSTMIYRLEVK 183
           +++A Q  S++  + L CF  +   L     P LP   ST++YRL  K
Sbjct: 780 VLFAFQEQSVEEKVILTCFSTVVNALGTRCKPYLPQIVSTILYRLNNK 827


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
 Frame = +2

Query: 404  GDVVGLCAAIEAL-GEASPEQISRTSTDRHFQNRGRI------ICITSARDDDSIRS-LA 559
            GD +G+C A+E L   A+PEQ+   S D  +  R  +      +  T+A   DS++S L 
Sbjct: 1959 GDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILG 2018

Query: 560  EIALNTLIQQNKKASIVQPNSSRDSPNATPQLL 658
            + A++ ++ Q  K  +   N S  + +A  +++
Sbjct: 2019 DRAVDDVLPQLLKL-LESENQSEQALSALREII 2050


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 500 RGRIICITSARDDDSIRSLAEIALNTLIQQNKKA 601
           +GR+  +T+A+D + +  L E+A  T I +N++A
Sbjct: 141 QGRVTSLTNAKDSERLELLKEVA-GTQIYENRRA 173


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 546 IESSSLALVIHIIRPLF*KCLSVDVRDICSGDA 448
           ++S SL L++  + PLF + L + + D  SGDA
Sbjct: 264 LQSHSLVLLLEQLSPLFKERLHLSLNDYKSGDA 296


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 167 GTGQVPLPPICKSLWTCSVEAAVEYCRIVWDLF 265
           G G +P  P+ + L T S++A  E  R   DL+
Sbjct: 234 GVGLIPWSPLARGLLTRSIDANEETIRSKTDLY 266


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +2

Query: 188 PPICKSLWTC-SVEAAVEYCRIVWDLFPESKL-VKFVVSDSVAHILNTWAALQQNLT 352
           P +   + TC S E A + CR + + FP+ K+ +++V+ D ++++ +  AA+Q   T
Sbjct: 36  PEVFTVILTCRSREKAEDACRRLKEFFPDRKIRLEYVLLD-LSNMASVEAAVQDIAT 91


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 396 VLEEMLSDSVQPLKHWVKHHQSRYHAHRLIDIFKIED 506
           VL EML +  +  K W+  +    HA+R++    IED
Sbjct: 94  VLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIED 130


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 393 VVLEEMLSDSVQPLKHWVKHHQSRY 467
           + L+E  +D ++ +KHW   + +RY
Sbjct: 63  ISLDEWSNDQIEKMKHWGNINANRY 87


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 515 CITSARDDDSIRSLAEIALNTLIQQNKKA 601
           C  SAR  DS++S+AE  ++ LI   ++A
Sbjct: 101 CGFSARKIDSLKSIAEATISGLIPTKEEA 129


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 346 FNSCPKWLVSCW 381
           FN+C +W++ CW
Sbjct: 377 FNACMRWVLVCW 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,278
Number of Sequences: 5004
Number of extensions: 64089
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)