Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464...    29   2.9  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    29   5.1  
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166...    29   5.1  
06_01_0651 + 4711369-4712431,4713069-4713763                           29   5.1  
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           29   5.1  
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773...    28   9.0  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    28   9.0  

>07_03_0262 +
           15944259-15944514,15945524-15945597,15946320-15946400,
           15946621-15946713,15946946-15947014,15947578-15947697,
           15948342-15948413,15948624-15948701,15949463-15949654
          Length = 344

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +1

Query: 379 WTSTSW-CWRRCCR 417
           W STSW CWR+ CR
Sbjct: 54  WWSTSWSCWRKACR 67


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 287 FVVSDSVAHILNTWAALQQNLTHVLNGLCLVGPVRRGAGG 406
           F+  D   H  + W       T +   LCL+ P   G GG
Sbjct: 798 FIEVDGEMHSFHAWDHSHPRATEIFAMLCLLSPTPTGVGG 837


>07_03_0909 +
           22512313-22512474,22513151-22513465,22513539-22516633,
           22516812-22516910,22517031-22517379
          Length = 1339

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 398 AGGDVVGLCAAIEALGEASPEQISRTSTDRHFQNRGRIICITSARDDDSIRSL 556
           +GG VV  C+ +     ++P Q+S T +D  F      +      ++  +R+L
Sbjct: 542 SGGRVVEYCSKVNLFRMSAPVQVSETGSDHTFPTSCPWMTAVQCHENGMVRTL 594


>06_01_0651 + 4711369-4712431,4713069-4713763
          Length = 585

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 299 DSVAHILNTWAALQQNLTHVLNGLCLVGPVRRGAGGDVVGLCAAI 433
           D  A      A+L     HV N L LV   RRG GG      AA+
Sbjct: 192 DGAAPSSGLLASLDDAYAHVTNSLSLVAG-RRGGGGSAASFAAAV 235


>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 257 PTLYDSTLPQLPHCKSTMIYRLEVKEPDRYL 165
           PT ++  LPQLP C    IYR  +  P ++L
Sbjct: 66  PTQHNVNLPQLPECLQVSIYRFAML-PKKHL 95


>03_06_0344 -
           33276366-33276548,33277044-33277169,33277254-33277322,
           33277401-33277505,33277595-33277633,33277717-33278016,
           33278093-33278182,33278271-33278312,33278433-33278516,
           33278762-33278947,33279218-33279403,33279663-33280025
          Length = 590

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 341 QNLTHVLNGLCLVGPVRRGAGGDVVGLCAAIEALGEA 451
           +++ H+LNG  ++G  + G+G  +  L  AIE L  A
Sbjct: 125 RSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIEMLHHA 161


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 214 LQCGSCGRVLSYS 252
           LQCGSC  +LSYS
Sbjct: 897 LQCGSCSEILSYS 909


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,818
Number of Sequences: 37544
Number of extensions: 385171
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)