Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30723| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)             29   5.2  
SB_53269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_32852| Best HMM Match : bZIP_2 (HMM E-Value=0.58)                   28   9.1  
SB_12521| Best HMM Match : Sprouty (HMM E-Value=0.48)                  28   9.1  
SB_39638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_37505| Best HMM Match : DM4_12 (HMM E-Value=5.3)                    28   9.1  

>SB_30723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +2

Query: 44  YAFIMNS----LFPVNHKTIFVLDHTPYFGISSEYPIDFDVSKGRGTGQVPL 187
           YA I++S    LFP NH+++ +LD     G+ +E    + V+K  GT  + L
Sbjct: 86  YARILDSTLATLFPGNHQSLHILDAGAGTGLMAESSQGYTVNKDNGTVLIEL 137


>SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 455 PEQISRTSTDRHF--QNRGRIICITSARDDDSI 547
           PE + +  TDR    Q  G + CI S +DDDS+
Sbjct: 307 PELLGKWYTDRKVTVQGEGDLYCICSVKDDDSL 339


>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
          Length = 392

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 59  NSLFPVNHKTIFVLDHTPYFGISSEYPIDFDVSKGRGTGQVPLPPI 196
           NS++ +    +  L + P FG+S   P    +++  G    PLPP+
Sbjct: 321 NSMYQIPPGNLSSLQNPPSFGMSPVRPPTHSMAQAMGAPPPPLPPM 366


>SB_53269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 617 NSSRDSPNATPQLLVTHYCH 676
           N + +SP +TP+  V HYC+
Sbjct: 32  NDTEESPKSTPRNCVVHYCN 51


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 365  GLCLVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTSTDRHFQNRGRIICITSARDDDS 544
            G+   G +R  A GD+V  C    +   A P   S    D  F N+  +  ++ ++DD S
Sbjct: 1828 GVSTAGGLR--ALGDLVNRCLVSFSTSIAFPHSASNVWQDFRFHNKYLMFAVSRSKDDPS 1885


>SB_32852| Best HMM Match : bZIP_2 (HMM E-Value=0.58)
          Length = 277

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 617 NSSRDSPNATPQLLVTHYCH 676
           N + +SP +TP+  V HYC+
Sbjct: 26  NDTEESPRSTPRNCVVHYCN 45


>SB_12521| Best HMM Match : Sprouty (HMM E-Value=0.48)
          Length = 314

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 617 NSSRDSPNATPQLLVTHYCH 676
           N + +SP +TP+  V HYC+
Sbjct: 234 NGTEESPKSTPRNCVVHYCN 253


>SB_39638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 617 NSSRDSPNATPQLLVTHYCH 676
           N + +SP +TP+  V HYC+
Sbjct: 26  NDTEESPKSTPRNCVVHYCN 45


>SB_37505| Best HMM Match : DM4_12 (HMM E-Value=5.3)
          Length = 134

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 287 FVVSDSV--AHILNTWAALQQNLTHVLNGLCLVGPVRRGAGGDVVGLCAAIE 436
           FVV+  V    +L  WAA Q+N+   L  LC    VR+    DVV +C   E
Sbjct: 2   FVVAILVPDGEVLKKWAA-QKNIQGDLKTLCEKEEVRQAVFEDVVRVCKEAE 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,826,131
Number of Sequences: 59808
Number of extensions: 469155
Number of successful extensions: 1304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)