Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118550-1|AAM49919.1|  689|Drosophila melanogaster LD33046p pro...   177   1e-44
AE014297-2171|AAF55290.1|  689|Drosophila melanogaster CG6814-PA...   177   1e-44
U47619-1|AAA90971.1|  545|Drosophila melanogaster ovary2 protein.     150   2e-36
AY060817-1|AAL28365.1|  721|Drosophila melanogaster GH28787p pro...    29   6.6  
AF153209-1|AAD47349.1|  721|Drosophila melanogaster origin recog...    29   6.6  
AF152093-1|AAD32712.2|  721|Drosophila melanogaster LATHEO protein.    29   6.6  
AF139062-1|AAD39472.1|  721|Drosophila melanogaster origin recog...    29   6.6  
AE014297-1535|AAF54826.1|  485|Drosophila melanogaster CG5333-PA...    29   6.6  
AE013599-1658|AAM68599.1|  721|Drosophila melanogaster CG4088-PB...    29   6.6  
AE013599-1657|AAF58411.1|  721|Drosophila melanogaster CG4088-PA...    29   6.6  

>AY118550-1|AAM49919.1|  689|Drosophila melanogaster LD33046p
           protein.
          Length = 689

 Score =  177 bits (431), Expect = 1e-44
 Identities = 106/246 (43%), Positives = 143/246 (58%), Gaps = 22/246 (8%)
 Frame = +2

Query: 65  LFPVNHKTIFVLDHTPYFGISSEYPIDFDVSKGR------GTGQVPLPP------ICKSL 208
           +F  N KTIFVLDHT YF I+SE  I  D  KG+       TG              KSL
Sbjct: 1   MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATGSGGSQFSKSL 60

Query: 209 WTCSVEAAVEYCRIVWDLFPESKLVKFVVSDSVAHILNTWAALQQNLTHVLNGLCLVGPV 388
           WTC+ E+++EYCR+VWDLFP  K V+F+VSD+ AHI+NTW    QN+ HV+N + +VG  
Sbjct: 61  WTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTWRPSTQNMAHVMNAMLIVGVP 120

Query: 389 RRG--AGGD---VVGLCAAIEALGEASPEQISRTS---TDR--HFQNRGRIICITSARDD 538
            R      D   + GL AAIEAL E + EQ++  +   TD      N+GR+ICITSARD+
Sbjct: 121 SRNVPTSSDYSVIHGLRAAIEALAEPTDEQLAAMADFGTDELPRIPNKGRVICITSARDN 180

Query: 539 DSIRSLAEIALNTLIQQNKKASIVQPNSSRDSPNATPQLLVTHYCHLIIINVTPEKAETR 718
            S++SL +I    L+QQN   ++  P S +         LV  +CHL+I+N+ P   E+ 
Sbjct: 181 TSMKSLEDIFNTVLVQQN---TLAAPPSKKG--------LVIDHCHLVILNIVPLGVESL 229

Query: 719 VNNQQL 736
           V N+ L
Sbjct: 230 VTNRSL 235


>AE014297-2171|AAF55290.1|  689|Drosophila melanogaster CG6814-PA
           protein.
          Length = 689

 Score =  177 bits (431), Expect = 1e-44
 Identities = 106/246 (43%), Positives = 143/246 (58%), Gaps = 22/246 (8%)
 Frame = +2

Query: 65  LFPVNHKTIFVLDHTPYFGISSEYPIDFDVSKGR------GTGQVPLPP------ICKSL 208
           +F  N KTIFVLDHT YF I+SE  I  D  KG+       TG              KSL
Sbjct: 1   MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATGSGGSQFSKSL 60

Query: 209 WTCSVEAAVEYCRIVWDLFPESKLVKFVVSDSVAHILNTWAALQQNLTHVLNGLCLVGPV 388
           WTC+ E+++EYCR+VWDLFP  K V+F+VSD+ AHI+NTW    QN+ HV+N + +VG  
Sbjct: 61  WTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTWRPSTQNMAHVMNAMLIVGVP 120

Query: 389 RRG--AGGD---VVGLCAAIEALGEASPEQISRTS---TDR--HFQNRGRIICITSARDD 538
            R      D   + GL AAIEAL E + EQ++  +   TD      N+GR+ICITSARD+
Sbjct: 121 SRNVPTSSDYSVIHGLRAAIEALAEPTDEQLAAMADFGTDELPRIPNKGRVICITSARDN 180

Query: 539 DSIRSLAEIALNTLIQQNKKASIVQPNSSRDSPNATPQLLVTHYCHLIIINVTPEKAETR 718
            S++SL +I    L+QQN   ++  P S +         LV  +CHL+I+N+ P   E+ 
Sbjct: 181 TSMKSLEDIFNTVLVQQN---TLAAPPSKKG--------LVIDHCHLVILNIVPLGVESL 229

Query: 719 VNNQQL 736
           V N+ L
Sbjct: 230 VTNRSL 235


>U47619-1|AAA90971.1|  545|Drosophila melanogaster ovary2 protein.
          Length = 545

 Score =  150 bits (363), Expect = 2e-36
 Identities = 84/189 (44%), Positives = 116/189 (61%), Gaps = 10/189 (5%)
 Frame = +2

Query: 200 KSLWTCSVEAAVEYCRIVWDLFPESKLVKFVVSDSVAHILNTWAALQQNLTHVLNGLCLV 379
           KSLWTC+ E+++EYCR+VWDLFP  K V+F+VSD+ AHI+NTW    QN+ HV+N + +V
Sbjct: 31  KSLWTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTWRPSTQNMAHVMNAMLIV 90

Query: 380 GPVRRG--AGGD---VVGLCAAIEALGE---ASPEQISRTSTDR--HFQNRGRIICITSA 529
           G   R      D   + GL AAIEAL E   +S   ++   TD      N+GR+ICITSA
Sbjct: 91  GVPSRNVPTSSDYSVIHGLRAAIEALAEPPMSSWAAMADFGTDELPRIPNKGRVICITSA 150

Query: 530 RDDDSIRSLAEIALNTLIQQNKKASIVQPNSSRDSPNATPQLLVTHYCHLIIINVTPEKA 709
           RD+ S++SL +I    L+QQN   S+  P S +         LV  +CHL+I+N+ P   
Sbjct: 151 RDNTSMKSLEDIFNTVLVQQN---SLAAPPSKKG--------LVIDHCHLVILNIVPLGV 199

Query: 710 ETRVNNQQL 736
           E+ V N+ L
Sbjct: 200 ESLVTNRSL 208


>AY060817-1|AAL28365.1|  721|Drosophila melanogaster GH28787p
           protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 374 LVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTS--TDRHFQNRGRIICITSARDDDSI 547
           +VG   R    +V+   A +  + +  P+ +S+ +  T R    R  ++C+  +RD  ++
Sbjct: 83  VVGQAERDTPDEVLPTAALLTGINQ--PDHLSQFTALTQRLHAQRAAMVCVLQSRDCATL 140

Query: 548 RSLAEIALNTLIQQN 592
           ++  E  +  L++ N
Sbjct: 141 KAAVETLVFGLVEDN 155


>AF153209-1|AAD47349.1|  721|Drosophila melanogaster origin
           recognition complex subunit protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 374 LVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTS--TDRHFQNRGRIICITSARDDDSI 547
           +VG   R    +V+   A +  + +  P+ +S+ +  T R    R  ++C+  +RD  ++
Sbjct: 83  VVGQAERDTPDEVLPTAALLTGINQ--PDHLSQFTALTQRLHAQRAAMVCVLQSRDCATL 140

Query: 548 RSLAEIALNTLIQQN 592
           ++  E  +  L++ N
Sbjct: 141 KAAVETLVFGLVEDN 155


>AF152093-1|AAD32712.2|  721|Drosophila melanogaster LATHEO protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 374 LVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTS--TDRHFQNRGRIICITSARDDDSI 547
           +VG   R    +V+   A +  + +  P+ +S+ +  T R    R  ++C+  +RD  ++
Sbjct: 83  VVGQAERDTPDEVLPTAALLTGINQ--PDHLSQFTALTQRLHAQRAAMVCVLQSRDCATL 140

Query: 548 RSLAEIALNTLIQQN 592
           ++  E  +  L++ N
Sbjct: 141 KAAVETLVFGLVEDN 155


>AF139062-1|AAD39472.1|  721|Drosophila melanogaster origin
           recognition complex subunit3 protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 374 LVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTS--TDRHFQNRGRIICITSARDDDSI 547
           +VG   R    +V+   A +  + +  P+ +S+ +  T R    R  ++C+  +RD  ++
Sbjct: 83  VVGQAERDTPDEVLPTAALLTGINQ--PDHLSQFTALTQRLHAQRAAMVCVLQSRDCATL 140

Query: 548 RSLAEIALNTLIQQN 592
           ++  E  +  L++ N
Sbjct: 141 KAAVETLVFGLVEDN 155


>AE014297-1535|AAF54826.1|  485|Drosophila melanogaster CG5333-PA
           protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/70 (22%), Positives = 27/70 (38%)
 Frame = +2

Query: 434 EALGEASPEQISRTSTDRHFQNRGRIICITSARDDDSIRSLAEIALNTLIQQNKKASIVQ 613
           E  G   P  +    +D       ++  +  A DDD     +    N LI    +  ++ 
Sbjct: 174 ERNGNVRPNALQYAKSDIQIDEPAKLEQVKIAADDDDDEDESTSLENELISGFHQMDMIS 233

Query: 614 PNSSRDSPNA 643
           P ++ D PNA
Sbjct: 234 PQNADDDPNA 243


>AE013599-1658|AAM68599.1|  721|Drosophila melanogaster CG4088-PB,
           isoform B protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 374 LVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTS--TDRHFQNRGRIICITSARDDDSI 547
           +VG   R    +V+   A +  + +  P+ +S+ +  T R    R  ++C+  +RD  ++
Sbjct: 83  VVGQAERDTPDEVLPTAALLTGINQ--PDHLSQFTALTQRLHAQRAAMVCVLQSRDCATL 140

Query: 548 RSLAEIALNTLIQQN 592
           ++  E  +  L++ N
Sbjct: 141 KAAVETLVFGLVEDN 155


>AE013599-1657|AAF58411.1|  721|Drosophila melanogaster CG4088-PA,
           isoform A protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 374 LVGPVRRGAGGDVVGLCAAIEALGEASPEQISRTS--TDRHFQNRGRIICITSARDDDSI 547
           +VG   R    +V+   A +  + +  P+ +S+ +  T R    R  ++C+  +RD  ++
Sbjct: 83  VVGQAERDTPDEVLPTAALLTGINQ--PDHLSQFTALTQRLHAQRAAMVCVLQSRDCATL 140

Query: 548 RSLAEIALNTLIQQN 592
           ++  E  +  L++ N
Sbjct: 141 KAAVETLVFGLVEDN 155


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,982,306
Number of Sequences: 53049
Number of extensions: 687650
Number of successful extensions: 1683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)