Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical ...    45   5e-05
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   4.6  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   4.6  
AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical ...    29   4.6  

>AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical
           protein R02D3.4 protein.
          Length = 782

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
 Frame = +2

Query: 83  KTIFVLDHTPYFGISSEYPIDFDVSKGRGTGQVPLPPICKSLWTCSVEAAVEYCRIVWDL 262
           KT+F+LD +  F  +      FDV+   G  Q  L    K++WT  +E   E  RI+ D+
Sbjct: 7   KTVFLLDRSAKFVENCNET--FDVTIREGPKQKKLQ-FEKTIWTWCLEGIFEMHRILSDV 63

Query: 263 FPESKL-VKFVVSDSVAHILNT-WAALQQNLTHVLNGLCLVGPVRRG--AGGDVV---GL 421
           +P   L ++F ++D +  +L+T W      LT    G  L+  V R   A  D+    GL
Sbjct: 64  YPRGTLQLRFALADFMGKMLDTQWT--DGFLTREELGE-LIETVSRPSEANTDITPIGGL 120

Query: 422 CAAIEALGEASPEQISRTSTDRHFQNR 502
             AIEAL   SPEQ +     R+  N+
Sbjct: 121 TMAIEALAVQSPEQRNYNYDVRYSANK 147


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 176  DRYLGLSIHQNLLGILKIFQSTVCDQEQILFYDLQGKGNSL*MRK 42
            D + G+    N +  L+   STVCD+  +++ D+QG+  S+ + K
Sbjct: 2101 DVFPGIHYTANQMRELRQQLSTVCDEHLLIYSDVQGEMGSMWLDK 2145


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 176  DRYLGLSIHQNLLGILKIFQSTVCDQEQILFYDLQGKGNSL*MRK 42
            D + G+    N +  L+   STVCD+  +++ D+QG+  S+ + K
Sbjct: 2101 DVFPGIHYTANQMRELRQQLSTVCDEHLLIYSDVQGEMGSMWLDK 2145


>AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical
           protein H20J04.7 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 584 QQNKKASIVQPNSSRDSPNATPQLLVTHYCHLIII 688
           Q+NKK  I   N SR+  +   ++L+T   +LIII
Sbjct: 231 QKNKKVLINTTNMSREEKSVHIEILITSILYLIII 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,291
Number of Sequences: 27780
Number of extensions: 362469
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)