Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.75 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    24   1.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   1.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 429 PLKHWVKHHQSRYHAHR 479
           P  H  +HH S+YH HR
Sbjct: 314 PSYHPHQHHPSQYHPHR 330


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 632 SPNATPQLLVTHYCHLIIINVTPEKAETRVNNQQ 733
           S NAT  + V  +  ++I+ + P K E   N++Q
Sbjct: 5   SKNATHLITVLLFSFVVILLIIPSKCEAVSNDRQ 38


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 632 SPNATPQLLVTHYCHLIIINVTPEKAETRVNNQQ 733
           S NAT  + V  +  ++I+ + P K E   N+ Q
Sbjct: 5   SKNATHLITVLLFSFVVILLIIPSKCEAVSNDMQ 38


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -2

Query: 275 CFQEINPTLYDSTLPQLPHCKSTMIYRLEVKEPDRYLGLSIHQNLLGI 132
           CF +     YD     L H    M  ++E+    R    S+  ++LG+
Sbjct: 159 CFMKFGSWTYDGIQIDLKHINQNMGDKVEIGIDLREYYPSVEWDILGV 206


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 645 VALGESLLLFGWTME 601
           + L  SL+ FGWT+E
Sbjct: 6   LVLLSSLVTFGWTLE 20


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 645 VALGESLLLFGWTME 601
           + L  SL+ FGWT+E
Sbjct: 6   LVLLSSLVTFGWTLE 20


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +1

Query: 169 YRSGSFTSNL*IIVDLQCGSCGRVLSYSVGFIS*KQI 279
           Y    +   L  +  +Q   CGR+     G +  KQI
Sbjct: 111 YNDVKYCDGLTSVYRMQVDKCGRLWILDTGILGEKQI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,117
Number of Sequences: 438
Number of extensions: 4866
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)