Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0114
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43600.1 68418.m05330 N-carbamyl-L-amino acid hydrolase, puta...    31   0.61 
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    31   0.80 
At1g43730.1 68414.m05028 hypothetical protein                          29   3.2  
At1g77650.1 68414.m09040 F-box family protein contains F-box dom...    28   5.7  
At5g67550.1 68418.m08518 expressed protein                             28   7.5  
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla...    28   7.5  
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa...    28   7.5  

>At5g43600.1 68418.m05330 N-carbamyl-L-amino acid hydrolase,
           putative similar to N-carbamoyl-L-amino acid hydrolase
           [Bacillus stearothermophilus] SWISS-PROT:Q53389
          Length = 476

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 27/87 (31%), Positives = 39/87 (44%)
 Frame = +2

Query: 182 PLPPICKSLWTCSVEAAVEYCRIVWDLFPESKLVKFVVSDSVAHILNTWAALQQNLTHVL 361
           P P + + L+T   +  V   R V +L   + L   V  D+V +I   W  L+ NL  V 
Sbjct: 80  PSPSVTRVLYT---DKDVSARRYVKNLMALAGLT--VREDAVGNIFGKWDGLEPNLPAVA 134

Query: 362 NGLCLVGPVRRGAGGDVVGLCAAIEAL 442
            G  +      G    VVG+  AIEA+
Sbjct: 135 TGSHIDAIPYSGKYDGVVGVLGAIEAI 161


>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +2

Query: 26  LSKNLFYAFIMNSLFPVNHKTIFV-LDHTPYFG------ISSEYPIDFDVSKGRGTGQVP 184
           LSKN F+  I NSLF   +KT FV L H    G      ++    I FD S    TG   
Sbjct: 152 LSKNAFFGEIPNSLFKFCYKTKFVSLSHNNLSGSIPESIVNCNNLIGFDFSYNGITGL-- 209

Query: 185 LPPIC 199
           LP IC
Sbjct: 210 LPRIC 214


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 364 WLVSCWTSTSWCWRRCCR 417
           W ++  TS SW WRR C+
Sbjct: 41  WTLNSTTSDSWIWRRLCK 58


>At1g77650.1 68414.m09040 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 383

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 257 PTLYDSTLPQLPHCKSTMIYRLEVKEPDRYLGLSIHQNLLGILKIFQS 114
           P  +DS    + HC   ++ R   +  DRY  L++   + G LK  +S
Sbjct: 78  PAEFDSVTFNVIHCDGLLLCRWTTRGLDRYNKLAVWNPISGQLKFVES 125


>At5g67550.1 68418.m08518 expressed protein
          Length = 439

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 173 GQVPLP--PICKSLWTCSVEAAVEYCRIVWDLFPESKLVK-FVVSDSVAHILNTWAALQQ 343
           G +P+   P   S +TC  +   E CRI     PE+  +K +  S+S   +L+   +  Q
Sbjct: 303 GAIPIGEFPNILSRFTCHDKDPPETCRITGKFIPEAAYLKVYAYSNSAQGMLDILPSF-Q 361

Query: 344 NLTHVL 361
           NLT  L
Sbjct: 362 NLTECL 367


>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 858

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 551 SLAEIALNTLIQQNKKASIVQPNSSRDSPNATPQLLVTHYCHLIIINVTPEKAETRVNNQ 730
           +L  + +   I Q KKA I     + DS      L+  +Y +L++++ TP++ E  V  +
Sbjct: 555 NLRFLEIKDFISQWKKALIDVSKIAFDSTEWNRGLITQNYVNLLLLSTTPKEYEELVGIE 614

Query: 731 QLT 739
             T
Sbjct: 615 DHT 617


>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 441

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 335 MQPKCLIYALQNHSLQI*LICFQEINPTLYD 243
           ++ + + + +Q HS    LICFQE+ P +YD
Sbjct: 190 LRMRAIGHLIQLHSPH--LICFQEVTPEIYD 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,028
Number of Sequences: 28952
Number of extensions: 327841
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)