Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0112
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   200   1e-52
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   200   1e-52
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.002
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     27   3.2  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   4.2  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   5.5  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   9.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  200 bits (489), Expect = 1e-52
 Identities = 92/139 (66%), Positives = 112/139 (80%)
 Frame = +1

Query: 1   TERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNV 180
           +ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DKKCPF G V
Sbjct: 9   SERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQV 61

Query: 181 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIV 360
           SIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+V
Sbjct: 62  SIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVV 120

Query: 361 TIGECRPLSKTVRFNVLKV 417
           T+G+CRPLSKTVRFNVL+V
Sbjct: 121 TVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  200 bits (489), Expect = 1e-52
 Identities = 92/139 (66%), Positives = 112/139 (80%)
 Frame = +1

Query: 1   TERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNV 180
           +ER+FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DKKCPF G V
Sbjct: 9   SERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQV 61

Query: 181 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIV 360
           SIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+V
Sbjct: 62  SIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVV 120

Query: 361 TIGECRPLSKTVRFNVLKV 417
           T+G+CRPLSKTVRFNVL+V
Sbjct: 121 TVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 205 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 384
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 385 SKTVRFNVLKV 417
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 600 HLNNNSYGKIIFFSAVTTYFPSSESILLQP 511
           HLNN+  G I FF  +++   ++  ++L+P
Sbjct: 160 HLNNHDEGIIKFFGKISSLLETNGVLILEP 189


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 116 LKPRPTSLWYLNGFLLRFTP 57
           L P+PT+ W  NGF  + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 264 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 157
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 246 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 139
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 VEIGDIVTIGECRPLSKTVRFNVL 411
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,796
Number of Sequences: 5004
Number of extensions: 51113
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)