Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0112
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             219   1e-57
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.089
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.16 
SB_19404| Best HMM Match : Pkinase (HMM E-Value=0.00019)               29   3.4  
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   7.7  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  219 bits (536), Expect = 1e-57
 Identities = 100/151 (66%), Positives = 123/151 (81%), Gaps = 12/151 (7%)
 Frame = +1

Query: 1   TERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTP------------REAIEGT 144
           TER++QKQ  +F NRK+ +G    +K LR+ ++VGLGFKTP            REAIEGT
Sbjct: 5   TERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGT 64

Query: 145 YIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLS 324
           YIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H S
Sbjct: 65  YIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCS 124

Query: 325 PCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 417
           PCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 125 PCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 349 GDIVTIGECRPLSKTVRFNVLKV 417
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +1

Query: 169 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 348
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 349 GDIVTIGECRPLSKTVRFNVLKV 417
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_19404| Best HMM Match : Pkinase (HMM E-Value=0.00019)
          Length = 372

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 660 SYPSETRSTSNPSIIKKNLAHLNNNSYGK 574
           S+ S  RS++ P +I K+L    NNSY K
Sbjct: 120 SFASLRRSSATPDLINKSLLKDQNNSYSK 148


>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 231 LHLHFLNDAGEDAAADRNVTSEGTLLVNVGTLNRLTG 121
           LH+ F  D  E  A   N+ S  T+++N+ T N++TG
Sbjct: 868 LHIDF-GDCFEVTAHLNNINSITTIIINIVTFNKVTG 903


>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 99  ILVVSQRFSAPLHTNTFLAVQ 37
           ILV+ Q F  P HTN F+A Q
Sbjct: 78  ILVLVQPFPLPYHTNAFIAAQ 98


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 342 HVPEARRQMHGHIPVPFLEP 283
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 196 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 333
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,184,646
Number of Sequences: 59808
Number of extensions: 370408
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)