Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0112
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 202 2e-52
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 196 8e-51
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 191 3e-49
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.003
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.014
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.51
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.68
At5g17670.1 68418.m02071 expressed protein 27 8.4
At4g26980.1 68417.m03882 expressed protein 27 8.4
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 8.4
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 202 bits (492), Expect = 2e-52
Identities = 95/140 (67%), Positives = 114/140 (81%), Gaps = 1/140 (0%)
Frame = +1
Query: 1 TERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 177
TE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAIEGTYID+KCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGT 64
Query: 178 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 357
VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+ GD
Sbjct: 65 VSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDR 123
Query: 358 VTIGECRPLSKTVRFNVLKV 417
VTIG+CRPLSKTVRFNVLKV
Sbjct: 124 VTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 196 bits (479), Expect = 8e-51
Identities = 91/140 (65%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Frame = +1
Query: 1 TERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 177
TE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAI+G Y+DKKCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGT 64
Query: 178 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 357
VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+ GD
Sbjct: 65 VSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDH 123
Query: 358 VTIGECRPLSKTVRFNVLKV 417
+ IG+CRPLSKTVRFNVLKV
Sbjct: 124 IIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 191 bits (466), Expect = 3e-49
Identities = 90/140 (64%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
Frame = +1
Query: 1 TERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 177
TE++F KQP VFL+ K G G + + R+ K++GLGFKTPREAI+G YID KCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGT 64
Query: 178 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 357
VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD
Sbjct: 65 VSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDH 123
Query: 358 VTIGECRPLSKTVRFNVLKV 417
V IG+CRPLSKTVRFNVLKV
Sbjct: 124 VIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 205 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 381
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 382 LSKTVRFNVLKV 417
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 193 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 372
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 373 CRPLSK 390
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 193 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 372
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 373 CRPLSKTVRFNVLKV 417
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 79 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 165
P++YHKD G KT R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 125 RGVLKPRPTSLWYLN 81
RG L+PRP WYLN
Sbjct: 86 RGTLRPRPVLDWYLN 100
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 115 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 219
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 190 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 306
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,191
Number of Sequences: 28952
Number of extensions: 264933
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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